sourmash 4.6.1-foss-2022a

There is a newer install of sourmash

Quickly search, compare, and analyze genomic and metagenomic data sets. sourmash is a k-mer analysis multitool, and we aim to provide stable, robust programmatic and command-line APIs for a variety of sequence comparisons.

Accessing sourmash 4.6.1-foss-2022a

To load the module for sourmash 4.6.1-foss-2022a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2022a
module load sourmash/4.6.1-foss-2022a

BEAR Apps Version

2022a

Architectures

EL8-emeraldrapids — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two parts: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Extensions

• bz2file 0.98
• cachetools 4.0.0
• deprecation 2.0.6
• milksnake 0.1.6
• mmh3 3.0.0
• screed 1.0.5
• sourmash 4.6.1

More Information

For more information visit the sourmash website.

Dependencies

This version of sourmash has a direct dependency on: foss/2022a matplotlib/3.5.2-foss-2022a Python/3.10.4-GCCcore-11.3.0 PyYAML/6.0-GCCcore-11.3.0 SciPy-bundle/2022.05-foss-2022a

Required By

This version of sourmash is a direct dependent of: starfish/1.1.0-foss-2022a

Other Versions

These versions of sourmash are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 28th January 2026