PyHMMER 0.10.6-gompi-2022b
HMMER is a biological sequence analysis tool that uses profile hidden Markov models to search for sequence homologs. HMMER3 is developed and maintained by the Eddy/Rivas Laboratory at Harvard University. pyhmmer is a Python package, implemented using the Cython language, that provides bindings to HMMER3. It directly interacts with the HMMER internals, which has the following advantages over CLI wrappers (like hmmer-py)Accessing PyHMMER 0.10.6-gompi-2022b
To load the module for PyHMMER 0.10.6-gompi-2022b please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):
📋
module load bear-apps/2022b
module load PyHMMER/0.10.6-gompi-2022b
BEAR Apps Version
Architectures
EL8-cascadelake — EL8-sapphirerapids
The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
Extensions
- pyhmmer 0.10.6
More Information
For more information visit the PyHMMER website.
Dependencies
This version of PyHMMER has a direct dependency on: gompi/2022b HMMER/3.3.2-gompi-2022b psutil/5.9.5-GCCcore-12.2.0 Python/3.10.8-GCCcore-12.2.0
Required By
This version of PyHMMER is a direct dependent of: bakta/1.9.4-foss-2022b
Last modified on 31st July 2024