UMI-VarCal 2.8.2-foss-2022b

UMI-based variant caller that efficiently improves low-frequency variant detection in paired-end sequencing NGS libraries

Accessing UMI-VarCal 2.8.2-foss-2022b

To load the module for UMI-VarCal 2.8.2-foss-2022b please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2022b
module load UMI-VarCal/2.8.2-foss-2022b

BEAR Apps Version

2022b

Architectures

EL8-cascadelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the UMI-VarCal website.

Dependencies

This version of UMI-VarCal has a direct dependency on: Cython/3.0.8-GCCcore-12.2.0 foss/2022b msgpack/0.5.6-foss-2022b pyfaidx/0.7.2.1-GCCcore-12.2.0 pyfasta/0.5.2-foss-2022b Pysam/0.21.0-GCC-12.2.0 Python/3.10.8-GCCcore-12.2.0 SciPy-bundle/2023.02-gfbf-2022b statsmodels/0.14.0-gfbf-2022b

Last modified on 16th July 2024