defense-finder 1.3.0-foss-2022b

DefenseFinder is a program to systematically detect known anti-phage systems.

Accessing defense-finder 1.3.0-foss-2022b

To load the module for defense-finder 1.3.0-foss-2022b please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2022b
module load defense-finder/1.3.0-foss-2022b

BEAR Apps Version

2022b

Architectures

EL8-cascadelake — EL8-emr — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Extensions

• click 8.0.3
• colorlog 6.3.0a1
• MacSyFinder 2.1.1
• mdmparis-defense-finder-1.3.0
• pyrodigal 3.6.3

More Information

For more information visit the defense-finder website.

Dependencies

This version of defense-finder has a direct dependency on: archspec/0.2.0-GCCcore-12.2.0 foss/2022b HMMER/3.3.2-gompi-2022b networkx/2.8.8-gfbf-2022b PyHMMER/0.10.6-gompi-2022b Python/3.10.8-GCCcore-12.2.0 PyYAML/6.0-GCCcore-12.2.0 SciPy-bundle/2023.02-gfbf-2022b

Last modified on 25th November 2024