CellBender 0.3.2-foss-2023a-CUDA-12.1.1

CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.

Accessing CellBender 0.3.2-foss-2023a-CUDA-12.1.1

To load the module for CellBender 0.3.2-foss-2023a-CUDA-12.1.1 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2023a module load CellBender/0.3.2-foss-2023a-CUDA-12.1.1

There is a CPU version of this module: CellBender 0.3.2-foss-2023a

BEAR Apps Version

2023a

Architectures

EL8-icelake (GPUs: NVIDIA A100, NVIDIA A30)

The listed architectures consist of two parts: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Extensions

CellBender 0.3.2
jupyter 1.0.0
jupyter_console 6.6.3
lxml_html_clean 0.4.2
mistune 0.8.4
nbconvert 6.5.4
notebook 6.5.7

More Information

For more information visit the CellBender website.

Dependencies

This version of CellBender has a direct dependency on: anndata/0.10.5.post1-foss-2023a CUDA/12.1.1 foss/2023a jupyter-contrib-nbextensions/0.7.0-GCCcore-12.3.0 loompy/3.0.7-foss-2023a matplotlib/3.7.2-gfbf-2023a pyro-ppl/1.9.0-foss-2023a-CUDA-12.1.1 PyTables/3.8.0-foss-2023a Python/3.11.3-GCCcore-12.3.0 Qtconsole/5.5.1-GCCcore-12.3.0

Other Versions

These versions of CellBender are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Version	BEAR Apps Version
0.3.2-foss-2023a	2023a
0.2.0-foss-2021a-CUDA-11.3.1	2021a
0.2.0-foss-2021a	2021a

Last modified on 8th October 2025