EIGENSOFT 8.0.0-foss-2023a

The EIGENSOFT package combines functionality from our population genetics methods (Patterson et al. 2006) and our EIGENSTRAT stratification correction method (Price et al. 2006). The EIGENSTRAT method uses principal components analysis to explicitly model ancestry differences between cases and controls along continuous axes of variation; the resulting correction is specific to a candidate marker's variation in frequency across ancestral populations, minimizing spurious associations while maximizing power to detect true associations. The EIGENSOFT package has a built-in plotting script and supports multiple file formats and quantitative phenotypes.

Accessing EIGENSOFT 8.0.0-foss-2023a

To load the module for EIGENSOFT 8.0.0-foss-2023a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2023a
module load EIGENSOFT/8.0.0-foss-2023a

BEAR Apps Version

2023a

Architectures

EL8-cascadelake — EL8-emr — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the EIGENSOFT website.

Dependencies

This version of EIGENSOFT has a direct dependency on: foss/2023a GSL/2.7-GCC-12.3.0 Perl/5.36.1-GCCcore-12.3.0

Other Versions

These versions of EIGENSOFT are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 14th October 2024