BUSCO 4.0.5-foss-2019b-Python-3.7.4

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

Accessing BUSCO 4.0.5-foss-2019b-Python-3.7.4

To load the module for BUSCO 4.0.5-foss-2019b-Python-3.7.4 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load BUSCO/4.0.5-foss-2019b-Python-3.7.4

BEAR Apps Version

2019b

Architectures

EL8-cascadelake — EL8-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the BUSCO website.

Dependencies

This version of BUSCO has a direct dependency on: AUGUSTUS/3.3.3-foss-2019b Biopython/1.75-foss-2019b-Python-3.7.4 BLAST+/2.9.0-gompi-2019b foss/2019b HMMER/3.2.1-gompi-2019b prodigal/2.6.3-GCCcore-8.3.0 Python/3.7.4-GCCcore-8.3.0 R/3.6.2-foss-2019b SEPP/4.3.10-foss-2019b-Python-3.7.4

Other Versions

These versions of BUSCO are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Version BEAR Apps Version
3.0.2-foss-2018b-Python-2.7.15 2018b

Last modified on 24th August 2022