AUGUSTUS 3.3.3-foss-2019b

There is a newer install of AUGUSTUS

AUGUSTUS is a program that predicts genes in eukaryotic genomic sequences

Accessing AUGUSTUS 3.3.3-foss-2019b

To load the module for AUGUSTUS 3.3.3-foss-2019b please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load AUGUSTUS/3.3.3-foss-2019b

BEAR Apps Version

2019b

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the AUGUSTUS website.

Dependencies

This version of AUGUSTUS has a direct dependency on: BamTools/2.5.1-GCC-8.3.0 BCFtools/1.10.2-GCC-8.3.0 Boost/1.71.0-gompi-2019b foss/2019b GSL/2.6-GCC-8.3.0 HTSlib/1.10.2-GCCcore-8.3.0 lpsolve/5.5.2.5-GCC-8.3.0 SAMtools/1.10-GCC-8.3.0 SQLite/3.29.0-GCCcore-8.3.0 SuiteSparse/5.6.0-foss-2019b-METIS-5.1.0 zlib/1.2.11-GCCcore-8.3.0

Required By

This version of AUGUSTUS is a direct dependent of: BUSCO/4.0.5-foss-2019b-Python-3.7.4 funannotate/1.8.1-foss-2019b-Python-2.7.16 funannotate/1.8.1-foss-2019b-Python-3.7.4

Other Versions

These versions of AUGUSTUS are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Version	BEAR Apps Version
3.5.0-foss-2022b	2022b
3.3.2-foss-2018b-Python-2.7.15	2018b

Last modified on 12th October 2020