BEAR Applications

SEPP 4.3.10-foss-2019b-Python-3.7.4

There is a newer version of SEPP

SATe-enabled Phylogenetic Placement - addresses the problem of phylogenetic placement of short reads into reference alignments and trees.

Accessing SEPP 4.3.10-foss-2019b-Python-3.7.4

To load the module for SEPP 4.3.10-foss-2019b-Python-3.7.4 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load SEPP/4.3.10-foss-2019b-Python-3.7.4

BEAR Apps Version

2019b

Architectures

EL8-cascadelake — EL8-haswell

The listed architectures consist of two part: OS-CPU.

• BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
• BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the SEPP website.

Dependencies

This version of SEPP has a direct dependency on: DendroPy/4.4.0-GCCcore-8.3.0 foss/2019b Python/3.7.4-GCCcore-8.3.0

Required By

This version of SEPP is a direct dependent of: BUSCO/4.0.5-foss-2019b-Python-3.7.4

Other Versions

These versions of SEPP are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 24th August 2022