MAGeCK 0.5.9.4-foss-2021a

Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent genome-scale CRISPR-Cas9 knockout screens (or GeCKO) technology. MAGeCK is developed by Wei Li and Han Xu from Dr. Xiaole Shirley Liu's lab at Dana-Farber Cancer Institute, and is being actively updated by Wei Li lab from Children's National Medical Center.

Accessing MAGeCK 0.5.9.4-foss-2021a

To load the module for MAGeCK 0.5.9.4-foss-2021a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load MAGeCK/0.5.9.4-foss-2021a

BEAR Apps Version

2021a

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the MAGeCK website.

Dependencies

This version of MAGeCK has a direct dependency on: foss/2021a Python/3.9.5-GCCcore-10.3.0 SciPy-bundle/2021.05-foss-2021a

Last modified on 7th March 2022