CIRI-long 1.1.0-foss-2021b

Circular RNA Identification for Long-Reads Nanopore Sequencing Data

Accessing CIRI-long 1.1.0-foss-2021b

To load the module for CIRI-long 1.1.0-foss-2021b please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2021b
module load CIRI-long/1.1.0-foss-2021b

BEAR Apps Version

2021b

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Extensions

• bwapy 0.1.4
• CIRI_long 1.1.0
• mappy 2.24
• pyccs 1.1.0

More Information

For more information visit the CIRI-long website.

Dependencies

This version of CIRI-long has a direct dependency on: Biopython/1.79-foss-2021b edlib/1.3.9-GCC-11.2.0 foss/2021b minimap2/2.24-GCCcore-11.2.0 Pysam/0.18.0-GCC-11.2.0 pyspoa/0.0.8-GCC-11.2.0 Python/3.9.6-GCCcore-11.2.0 python-Levenshtein/0.12.2-foss-2021b SAMtools/1.15.1-GCC-11.2.0 scikit-learn/1.0.1-foss-2021b SciPy-bundle/2021.10-foss-2021b

Last modified on 26th July 2022