DRAM 1.3.6-foss-2021b

DRAM (Distilled and Refined Annotation of Metabolism) is a tool for annotating metagenomic assembled genomes and VirSorter identified viral contigs. DRAM annotates MAGs and viral contigs using KEGG (if provided by the user), UniRef90, PFAM, dbCAN, RefSeq viral, VOGDB and the MEROPS peptidase database as well as custom user databases.

Accessing DRAM 1.3.6-foss-2021b

To load the module for DRAM 1.3.6-foss-2021b please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2021b
module load DRAM/1.3.6-foss-2021b

BEAR Apps Version

2021b

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Extensions

• altair 4.2.0
• DRAM-bio-1.3.6
• et-xmlfile-1.1.0
• greenlet 1.1.2
• openpyxl 3.0.9
• SQLAlchemy 1.4.40
• toolz 0.12.0

More Information

For more information visit the DRAM website.

Dependencies

This version of DRAM has a direct dependency on: barrnap/0.9-gompi-2021b foss/2021b HMMER/3.3.2-gompi-2021b MMseqs2/13-45111-gompi-2021b networkx/2.6.3-foss-2021b parallel/20210722-GCCcore-11.2.0 prodigal/2.6.3-GCCcore-11.2.0 Python/3.9.6-GCCcore-11.2.0 Ruby/3.0.1-GCCcore-11.2.0 scikit-bio/0.5.7-foss-2021b SciPy-bundle/2021.10-foss-2021b tRNAscan-SE/2.0.9-GCCcore-11.2.0

Last modified on 25th August 2022