CheckM 1.2.2-foss-2022a

CheckM provides a set of tools for assessing the quality of genomes recovered from isolates, single cells, or metagenomes.

Accessing CheckM 1.2.2-foss-2022a

To load the module for CheckM 1.2.2-foss-2022a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2022a module load CheckM/1.2.2-foss-2022a

BEAR Apps Version

2022a

Architectures

EL8-sapphirerapids

The listed architectures consist of two parts: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the CheckM website.

Dependencies

This version of CheckM has a direct dependency on: CheckM-Database/2015_01_16 DendroPy/4.5.2-GCCcore-11.3.0 foss/2022a HMMER/3.3.2-gompi-2022a matplotlib/3.5.2-foss-2022a pplacer/1.1.alpha19 prodigal/2.6.3-GCCcore-11.3.0 Pysam/0.19.1-GCC-11.3.0 Python/3.10.4-GCCcore-11.3.0 SciPy-bundle/2022.05-foss-2022a

Required By

This version of CheckM is a direct dependent of: dRep/3.4.2-foss-2022a

Other Versions

These versions of CheckM are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Version	BEAR Apps Version
1.1.3-foss-2021a	2021a
1.0.18-foss-2023a-Python-2.7.18	2023a

Last modified on 25th June 2025