HMMER 3.3.2-gompi-2022a

There is a newer install of HMMER

HMMER is used for searching sequence databases for homologs of protein sequences, and for making protein sequence alignments. It implements methods using probabilistic models called profile hidden Markov models (profile HMMs). Compared to BLAST, FASTA, and other sequence alignment and database search tools based on older scoring methodology, HMMER aims to be significantly more accurate and more able to detect remote homologs because of the strength of its underlying mathematical models. In the past, this strength came at significant computational expense, but in the new HMMER3 project, HMMER is now essentially as fast as BLAST.

Accessing HMMER 3.3.2-gompi-2022a

To load the module for HMMER 3.3.2-gompi-2022a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2022a
module load HMMER/3.3.2-gompi-2022a

BEAR Apps Version

2022a

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the HMMER website.

Dependencies

This version of HMMER has a direct dependency on: gompi/2022a

Required By

This version of HMMER is a direct dependent of: AlphaFold/2.3.2-foss-2022a AlphaFold/2.3.2-foss-2022a-CUDA-11.7.0 AlphaFold/2.3.1-foss-2022a-CUDA-11.7.0 AlphaFold/2.3.1-foss-2022a eggnog-mapper/2.1.9-foss-2022a RepeatMasker/4.1.5-foss-2022a

Other Versions

These versions of HMMER are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 4th April 2023