QUAST 5.2.0-foss-2022a

QUAST evaluates genome assemblies by computing various metrics. It works both with and without reference genomes. The tool accepts multiple assemblies, thus is suitable for comparison.

Accessing QUAST 5.2.0-foss-2022a

To load the module for QUAST 5.2.0-foss-2022a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2022a
module load QUAST/5.2.0-foss-2022a

BEAR Apps Version

2022a

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Extensions

• QUAST 5.2.0

More Information

For more information visit the QUAST website.

Dependencies

This version of QUAST has a direct dependency on: Boost/1.79.0-GCC-11.3.0 foss/2022a Java/11 matplotlib/3.5.2-foss-2022a Perl/5.34.1-GCCcore-11.3.0 Python/3.10.4-GCCcore-11.3.0

Last modified on 3rd October 2023