RMBlast 2.13.0-gompi-2022a

RMBlast is a RepeatMasker compatible version of the standard NCBI BLAST suite. The primary difference between this distribution and the NCBI distribution is the addition of a new program 'rmblastn' for use with RepeatMasker and RepeatModeler.

Accessing RMBlast 2.13.0-gompi-2022a

To load the module for RMBlast 2.13.0-gompi-2022a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2022a
module load RMBlast/2.13.0-gompi-2022a

BEAR Apps Version

2022a

Architectures

EL8-cascadelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the RMBlast website.

Dependencies

This version of RMBlast has a direct dependency on: Boost.MPI/1.79.0-gompi-2022a bzip2/1.0.8-GCCcore-11.3.0 GMP/6.2.1-GCCcore-11.3.0 gompi/2022a libjpeg-turbo/2.1.3-GCCcore-11.3.0 libpng/1.6.37-GCCcore-11.3.0 LMDB/0.9.29-GCCcore-11.3.0 PCRE/8.45-GCCcore-11.3.0 zlib/1.2.12-GCCcore-11.3.0

Required By

This version of RMBlast is a direct dependent of: funannotate/1.8.17-foss-2022a RepeatMasker/4.1.5-foss-2022a

Other Versions

These versions of RMBlast are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 12th August 2024