SignalP 6.0h-foss-2022a-fast
There is a newer install of SignalP
The SignalP 5.0 tool predicts the presence of signal peptides and the location of their cleavage sites in proteins from Archaea, Gram-positive Bacteria, Gram-negative Bacteria and Eukarya. In Bacteria and Archaea, SignalP 5.0 can discriminate between three types of signal peptides Sec/SPI (standard signal peptide), Sec/SPII (lipoprotein signal peptide) and Tat/SPI (tat signal peptide). SignalP 5.0 is based on a deep convolutional and recurrent neural network architecture including a conditional random field.Accessing SignalP 6.0h-foss-2022a-fast
To load the module for SignalP 6.0h-foss-2022a-fast please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):
📋
module load bear-apps/2022a
module load SignalP/6.0h-foss-2022a-fast
BEAR Apps Version
Architectures
EL8-cascadelake — EL8-sapphirerapids
The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
More Information
For more information visit the SignalP website.
Dependencies
This version of SignalP has a direct dependency on: foss/2022a matplotlib/3.5.2-foss-2022a Python/3.10.4-GCCcore-11.3.0 PyTorch/1.12.1-foss-2022a SciPy-bundle/2022.05-foss-2022a tqdm/4.64.0-GCCcore-11.3.0
Required By
This version of SignalP is a direct dependent of: funannotate/1.8.17-foss-2022a
Other Versions
These versions of SignalP are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.
Version | BEAR Apps Version |
---|---|
5.0b | 2019b |
6.0h-foss-2022b-fast | 2022b |
Last modified on 12th August 2024