Trimmomatic 0.39-Java-11

Trimmomatic performs a variety of useful trimming tasks for illumina paired-end and single ended data.The selection of trimming steps and their associated parameters are supplied on the command line.

Accessing Trimmomatic 0.39-Java-11

To load the module for Trimmomatic 0.39-Java-11 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2022a
module load Trimmomatic/0.39-Java-11

BEAR Apps Version

2022a

Architectures

EL8-cascadelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the Trimmomatic website.

Dependencies

This version of Trimmomatic has a direct dependency on: Java/11

Required By

This version of Trimmomatic is a direct dependent of: funannotate/1.8.1-foss-2019b-Python-2.7.16 funannotate/1.8.1-foss-2019b-Python-3.7.4 funannotate/1.8.17-foss-2022a KneadData/0.7.6-foss-2019b-Python-3.7.4-Java-11 shovill/1.1.0-foss-2019b-Python-3.7.4

Other Versions

These versions of Trimmomatic are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 10th June 2020