deepTools 3.5.2-foss-2022a

deepTools is a suite of python tools particularly developed for the efficient analysis of high-throughput sequencing data, such as ChIP-seq, RNA-seq or MNase-seq.

Accessing deepTools 3.5.2-foss-2022a

To load the module for deepTools 3.5.2-foss-2022a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2022a
module load deepTools/3.5.2-foss-2022a

BEAR Apps Version

2022a

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Extensions

• deepTools 3.5.2
• deeptoolsintervals 0.1.9
• numpydoc 1.5.0
• py2bit 0.3.0

More Information

For more information visit the deepTools website.

Dependencies

This version of deepTools has a direct dependency on: foss/2022a matplotlib/3.5.2-foss-2022a plotly.py/5.12.0-GCCcore-11.3.0 pyBigWig/0.3.18-foss-2022a Pysam/0.19.1-GCC-11.3.0 Python/3.10.4-GCCcore-11.3.0 SciPy-bundle/2022.05-foss-2022a

Other Versions

These versions of deepTools are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 14th December 2023