pblat 2.5.1-foss-2022a

When the query file format is fasta, you can specify many threads to process it. It can reduce run time linearly, and use almost equal memory as the original blat program. This is useful when you blat a big query file to a huge reference like human whole genome sequence.

Accessing pblat 2.5.1-foss-2022a

To load the module for pblat 2.5.1-foss-2022a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2022a
module load pblat/2.5.1-foss-2022a

BEAR Apps Version

2022a

Architectures

EL8-cascadelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the pblat website.

Dependencies

This version of pblat has a direct dependency on: foss/2022a HTSlib/1.15.1-GCC-11.3.0 OpenSSL/1.1 zlib/1.2.12-GCCcore-11.3.0

Required By

This version of pblat is a direct dependent of: PASA/2.5.2-foss-2022a

Last modified on 12th August 2024