scVelo 0.2.5-foss-2022a
scVelo is a scalable toolkit for estimating and analyzing RNA velocities in single cells using dynamical modeling.Accessing scVelo 0.2.5-foss-2022a
To load the module for scVelo 0.2.5-foss-2022a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):
📋
module load bear-apps/2022a
module load scVelo/0.2.5-foss-2022a
BEAR Apps Version
Architectures
EL8-emeraldrapids — EL8-icelake — EL8-sapphirerapids
The listed architectures consist of two parts: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
Extensions
- scVelo 0.2.5
More Information
For more information visit the scVelo website.
Dependencies
This version of scVelo has a direct dependency on: foss/2022a freetype/2.12.1-GCCcore-11.3.0 h5py/3.7.0-foss-2022a libpng/1.6.37-GCCcore-11.3.0 loompy/3.0.7-foss-2022a matplotlib/3.5.2-foss-2022a networkx/2.8.4-foss-2022a numba/0.56.4-foss-2022a PyTables/3.8.0-foss-2022a Python/3.10.4-GCCcore-11.3.0 scanpy/1.9.1-foss-2022a scikit-learn/1.1.2-foss-2022a SciPy-bundle/2022.05-foss-2022a Seaborn/0.12.1-foss-2022a statsmodels/0.13.1-foss-2022a Tkinter/3.10.4-GCCcore-11.3.0 tqdm/4.64.0-GCCcore-11.3.0 umap-learn/0.5.3-foss-2022a
Other Versions
These versions of scVelo are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.
| Version | BEAR Apps Version |
|---|---|
| 0.2.4-foss-2021a | 2021a |
| 0.1.25-foss-2019b-Python-3.7.4 | 2019b |
| 0.1.24-foss-2019b-Python-3.7.4 | 2019b |
Last modified on 26th November 2025