starfish 1.1.0-foss-2022a

starfish is a modular toolkit for giant mobile element annotation. Built primarily for annotating Starship elements in fungal genomes, it can be easily adapted to find any large mobile element (≥6kb) that shares the same basic architecture as a fungal Starship or a bacterial integrative and conjugative element: a "captain" gene with zero or more "cargo" genes downstream of its 3' end. It is particularly well suited for annotating low-copy number elements in a content independent manner.

Accessing starfish 1.1.0-foss-2022a

To load the module for starfish 1.1.0-foss-2022a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2022a
module load starfish/1.1.0-foss-2022a

BEAR Apps Version

2022a

Architectures

EL8-emeraldrapids — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two parts: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the starfish website.

Dependencies

This version of starfish has a direct dependency on: BEDTools/2.30.0-GCC-11.3.0 BLAST+/2.13.0-gompi-2022a Boost.MPI/1.79.0-gompi-2022a Cantera/2.5.1-foss-2022a Circos/0.69-8-GCCcore-11.3.0 eggnog-mapper/2.1.12-foss-2022a foss/2022a HMMER/3.3.2-gompi-2022a MAFFT/7.505-GCC-11.3.0-with-extensions MCL/14.137-GCCcore-11.3.0 MetaEuk/6-a5d39d9-GCC-11.3.0 minimap2/2.24-GCCcore-11.3.0 MMseqs2/14-7e284-gompi-2022a MUMmer/4.0.0rc1-GCCcore-11.3.0 Perl/5.34.1-GCCcore-11.3.0 SAMtools/1.16.1-GCC-11.3.0 sourmash/4.6.1-foss-2022a

Last modified on 28th January 2026