CMSeq 1.0.4-foss-2022b

There is a newer install of CMSeq

CMSeq is a set of commands to provide an interface to .bam files for coverage and sequence consensus.

Accessing CMSeq 1.0.4-foss-2022b

To load the module for CMSeq 1.0.4-foss-2022b please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2022b
module load CMSeq/1.0.4-foss-2022b

BEAR Apps Version

2022b

Architectures

EL8-cascadelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the CMSeq website.

Dependencies

This version of CMSeq has a direct dependency on: bcbio-gff/0.7.0-foss-2022b biom-format/2.1.15-foss-2022b Biopython/1.81-foss-2022b foss/2022b Pysam/0.21.0-GCC-12.2.0 Python/3.10.8-GCCcore-12.2.0 SAMtools/1.17-GCC-12.2.0 SciPy-bundle/2023.02-gfbf-2022b

Required By

This version of CMSeq is a direct dependent of: MetaPhlAn/4.1.0-foss-2022b

Other Versions

These versions of CMSeq are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 28th May 2024