ShortTracks 1.1-foss-2022b

Alignment of small RNA-seq data and annotation of small RNA-producing genes.

Accessing ShortTracks 1.1-foss-2022b

To load the module for ShortTracks 1.1-foss-2022b please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2022b
module load ShortTracks/1.1-foss-2022b

BEAR Apps Version

2022b

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the ShortTracks website.

Dependencies

This version of ShortTracks has a direct dependency on: foss/2022b Python/3.10.8-GCCcore-12.2.0 SAMtools/1.17-GCC-12.2.0

Required By

This version of ShortTracks is a direct dependent of: ShortStack/4.0.2-foss-2022b

Last modified on 25th October 2023