bakta 1.9.4-foss-2022b

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

Accessing bakta 1.9.4-foss-2022b

To load the module for bakta 1.9.4-foss-2022b please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2022b
module load bakta/1.9.4-foss-2022b

BEAR Apps Version

2022b

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Extensions

• about-time-4.2.1
• alive-progress-3.0.1
• bakta 1.9.4
• grapheme 0.6.0
• pilercrpy 20240725
• pyrodigal 3.5.0
• xopen 1.7.0

More Information

For more information visit the bakta website.

Dependencies

This version of bakta has a direct dependency on: AMRFinderPlus/3.11.26-gompi-2022b ARAGORN/1.2.41-foss-2022b archspec/0.2.0-GCCcore-12.2.0 Biopython/1.81-foss-2022b Circos/0.69-9-GCCcore-12.2.0 DIAMOND/2.1.8-GCC-12.2.0 foss/2022b Infernal/1.1.4-foss-2022b PILER-CR/1.06-GCC-12.2.0 prodigal/2.6.3-GCCcore-12.2.0 PyHMMER/0.10.6-gompi-2022b Python/3.10.8-GCCcore-12.2.0 python-isal/1.1.0-GCCcore-12.2.0 PyYAML/6.0-GCCcore-12.2.0 tRNAscan-SE/2.0.12-foss-2022b zlib-ng/2.1.6-GCCcore-12.2.0

Last modified on 31st July 2024