PhyloPhlAn 3.1.1-foss-2023a

PhyloPhlAn is an integrated pipeline for large-scale phylogenetic profiling of genomes and metagenomes. PhyloPhlAn is an accurate, rapid, and easy-to-use method for large-scale microbial genome characterization and phylogenetic analysis at multiple levels of resolution.

Accessing PhyloPhlAn 3.1.1-foss-2023a

To load the module for PhyloPhlAn 3.1.1-foss-2023a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2023a
module load PhyloPhlAn/3.1.1-foss-2023a

BEAR Apps Version

2023a

Architectures

EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two parts: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the PhyloPhlAn website.

Dependencies

This version of PhyloPhlAn has a direct dependency on: Biopython/1.83-foss-2023a BLAST+/2.14.1-gompi-2023a DendroPy/4.6.1-GCCcore-12.3.0 DIAMOND/2.1.8-GCC-12.3.0 FastTree/2.1.11-GCCcore-12.3.0 foss/2023a IQ-TREE/2.3.5-gompi-2023a MAFFT/7.520-GCC-12.3.0-with-extensions matplotlib/3.7.2-gfbf-2023a MUSCLE/5.1.0-GCCcore-12.3.0 Python/3.11.3-GCCcore-12.3.0 SciPy-bundle/2023.07-gfbf-2023a Seaborn/0.13.2-gfbf-2023a SEPP/4.5.5-foss-2023a trimAl/1.4.1-GCCcore-12.3.0 USEARCH/11.0.667-i86linux32

Required By

This version of PhyloPhlAn is a direct dependent of: MetaPhlAn/4.1.1-foss-2023a

Other Versions

These versions of PhyloPhlAn are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 29th April 2025