ncbi-vdb 3.0.10-gompi-2023a

There is a newer install of ncbi-vdb

The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archives.

Accessing ncbi-vdb 3.0.10-gompi-2023a

To load the module for ncbi-vdb 3.0.10-gompi-2023a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2023a module load ncbi-vdb/3.0.10-gompi-2023a

BEAR Apps Version

2023a

Architectures

EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two parts: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the ncbi-vdb website.

Dependencies

This version of ncbi-vdb has a direct dependency on: bzip2/1.0.8-GCCcore-12.3.0 gompi/2023a HDF5/1.14.0-gompi-2023a libxml2/2.11.4-GCCcore-12.3.0

Required By

This version of ncbi-vdb is a direct dependent of: Centrifuge/1.0.4.2-gompi-2023a SRA-Toolkit/3.0.10-gompi-2023a

Other Versions

These versions of ncbi-vdb are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Version	BEAR Apps Version
3.0.10-gompi-2022b	2022b
3.0.2-gompi-2022a	2022a
2.10.9-gompi-2020b	2020b
2.10.4-gompi-2019b	2019b
2.9.6-foss-2019a	2019a

Last modified on 2nd June 2025