Bowtie2 2.3.4.2-foss-2018b
Deprecated: Use of this version of Bowtie2 is deprecated. More information on our Applications Support and Retention Policy.
There is a newer version of Bowtie2
Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences.Accessing Bowtie2 2.3.4.2-foss-2018b
To load the module for Bowtie2 2.3.4.2-foss-2018b please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):
module load Bowtie2/2.3.4.2-foss-2018b
BEAR Apps Version
Architectures
EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell
The listed architectures consist of two part: OS-CPU.
- BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
- BEAR Cloud and CaStLeS VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.
Bowtie2 and Python
The bowtie2-build
and bowtie2-inspect
scripts require Python. Please load either Python 3 or Python 2, as necessary, if you wish to use these scripts.
More Information
For more information visit the Bowtie2 website.
Dependencies
This version of Bowtie2 has a direct dependency on: foss/2018b tbb/2018_U5-GCCcore-7.3.0 zlib/1.2.11-GCCcore-7.3.0
Required By
This version of Bowtie2 is a direct dependent of: ariba/2.13.5-foss-2018b-Python-3.6.6 srst2/0.2.0-foss-2018b-Python-2.7.15 TraCeR/0.6.0-foss-2018b-Python-3.6.6 TRAPeS/e65bb7b-foss-2018b-Python-2.7.15 Trinity/2.8.4-foss-2018b
Other Versions
These versions of Bowtie2 are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
Version | BEAR Apps Version |
---|---|
2.4.4-GCC-11.2.0 | 2021b |
2.4.4-GCC-10.3.0 | 2021a |
2.3.5.1-GCC-8.3.0 | 2019b |
Last modified on 3rd June 2019