Trinity 2.8.4-foss-2018b

Deprecated: Use of this version of Trinity is deprecated. More information on our Applications Support and Retention Policy.

There is a newer install of Trinity

Trinity represents a novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-Seq data. Trinity combines three independent software modules: Inchworm, Chrysalis, and Butterfly, applied sequentially to process large volumes of RNA-Seq reads.

Accessing Trinity 2.8.4-foss-2018b

To load the module for Trinity 2.8.4-foss-2018b please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load Trinity/2.8.4-foss-2018b

BEAR Apps Version

2018b

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the Trinity website.

Dependencies

This version of Trinity has a direct dependency on: ant/1.10.5-Java-1.8 Bowtie/1.2.2-foss-2018b Bowtie2/2.3.4.2-foss-2018b foss/2018b Java/1.8 ncurses/6.1-GCCcore-7.3.0 Perl/5.28.0-GCCcore-7.3.0 zlib/1.2.11-GCCcore-7.3.0

Other Versions

These versions of Trinity are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 11th July 2019