NiBabel 2.4.0-foss-2019a
There is a newer install of NiBabel
NiBabel provides read/write access to some common medical and neuroimaging file formats, including: ANALYZE (plain, SPM99, SPM2 and later), GIFTI, NIfTI1, NIfTI2, MINC1, MINC2, MGH and ECAT as well as Philips PAR/REC. We can read and write Freesurfer geometry, and read Freesurfer morphometry and annotation files. There is some very limited support for DICOM. NiBabel is the successor of PyNIfTI.Accessing NiBabel 2.4.0-foss-2019a
To load the module for NiBabel 2.4.0-foss-2019a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):
📋
module load NiBabel/2.4.0-foss-2019a
BEAR Apps Version
Architectures
EL8-cascadelake — EL8-icelake — EL8-sapphirerapids
The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
Extensions
- bz2file 0.98
- nibabel 2.4.0
- pydicom 1.2.0
More Information
For more information visit the NiBabel website.
Dependencies
This version of NiBabel has a direct dependency on: foss/2019a Pillow/6.0.0-GCCcore-8.2.0 Python/2.7.15-GCCcore-8.2.0 Python/3.7.2-GCCcore-8.2.0 SciPy-bundle/2019.03-foss-2019a
This version of NiBabel is compatible with multiple vesions of Python. At any time, only one of the versions of Python can be active and the desired version of Python should be loaded before loading this version of NiBabel.
Required By
This version of NiBabel is a direct dependent of: MNE-Python/0.19.1-foss-2019a-Python-3.7.2 Nipype/1.1.3-foss-2019a-Python-3.7.2
Other Versions
These versions of NiBabel are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.
Last modified on 22nd November 2019