ncbi-vdb 2.9.6-foss-2019a
There is a newer install of ncbi-vdb
The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archives.Accessing ncbi-vdb 2.9.6-foss-2019a
To load the module for ncbi-vdb 2.9.6-foss-2019a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):
📋
module load ncbi-vdb/2.9.6-foss-2019a
BEAR Apps Version
Architectures
EL8-cascadelake — EL8-icelake — EL8-sapphirerapids
The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
More Information
For more information visit the ncbi-vdb website.
Dependencies
This version of ncbi-vdb has a direct dependency on: bzip2/1.0.6-GCCcore-8.2.0 file/5.37-GCCcore-8.2.0 foss/2019a HDF5/1.10.5-gompi-2019a libxml2/2.9.8-GCCcore-8.2.0 NGS/2.9.6-foss-2019a-Java-11
Required By
This version of ncbi-vdb is a direct dependent of: HISAT2/2.1.0-foss-2019a
Other Versions
These versions of ncbi-vdb are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.
| Version | BEAR Apps Version |
|---|---|
| 3.0.10-gompi-2022b | 2022b |
| 3.0.2-gompi-2022a | 2022a |
| 2.10.9-gompi-2020b | 2020b |
| 2.10.4-gompi-2019b | 2019b |
Last modified on 1st August 2019