picard 2.21.1-Java-11
There is a newer install of picard
A set of tools (in Java) for working with next generation sequencing data in the BAM format.Accessing picard 2.21.1-Java-11
To load the module for picard 2.21.1-Java-11 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):
📋
module load picard/2.21.1-Java-11
BEAR Apps Version
Architectures
EL8-cascadelake — EL8-icelake — EL8-sapphirerapids
The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
CollectInsertSizeMetrics
If you want to use CollectInsertSizeMetrics
then you must load R please select a version of R in the same BEAR Apps Version as picard.
More Information
For more information visit the picard website.
Dependencies
This version of picard has a direct dependency on: Java/11
Required By
This version of picard is a direct dependent of: BatVI/1.02-foss-2019a gtex-pipeline/gtex_v8-foss-2019b-Python-3.7.4-R-3.6.2
Other Versions
These versions of picard are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.
Version | BEAR Apps Version |
---|---|
2.27.5-Java-11 | 2022b |
2.25.1-Java-11 | 2021b |
2.25.1-Java-11 | 2022a |
2.25.1-Java-11 | 2022b |
Last modified on 14th November 2019