GTDB-Tk 2.0.0-foss-2021a

A toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

Accessing GTDB-Tk 2.0.0-foss-2021a

To load the module for GTDB-Tk 2.0.0-foss-2021a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load GTDB-Tk/2.0.0-foss-2021a

BEAR Apps Version

2021a

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the GTDB-Tk website.

Dependencies

This version of GTDB-Tk has a direct dependency on: DendroPy/4.5.2-GCCcore-10.3.0 FastANI/1.33-GCC-10.3.0 FastTree/2.1.11-GCCcore-10.3.0 foss/2021a HMMER/3.3.2-gompi-2021a Mash/2.3-GCC-10.3.0 matplotlib/3.4.2-foss-2021a pplacer/1.1.alpha19 prodigal/2.6.3-GCCcore-10.3.0 Python/3.9.5-GCCcore-10.3.0 tqdm/4.61.2-GCCcore-10.3.0

Last modified on 22nd April 2022