GlimmerHMM 3.0.4c-GCC-11.3.0
There is a newer install of GlimmerHMM
GlimmerHMM is a new gene finder based on a Generalized Hidden Markov Model. Although the gene finder conforms to the overall mathematical framework of a GHMM, additionally it incorporates splice site models adapted from the GeneSplicer program and a decision tree adapted from GlimmerM. It also utilizes Interpolated Markov Models for the coding and noncoding models.Accessing GlimmerHMM 3.0.4c-GCC-11.3.0
To load the module for GlimmerHMM 3.0.4c-GCC-11.3.0 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):
📋
module load bear-apps/2022a
module load GlimmerHMM/3.0.4c-GCC-11.3.0
BEAR Apps Version
Architectures
EL8-cascadelake — EL8-sapphirerapids
The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
More Information
For more information visit the GlimmerHMM website.
Dependencies
This version of GlimmerHMM has a direct dependency on: GCC/11.3.0 Perl/5.34.1-GCCcore-11.3.0
Required By
This version of GlimmerHMM is a direct dependent of: funannotate/1.8.17-foss-2022a
Other Versions
These versions of GlimmerHMM are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.
Version | BEAR Apps Version |
---|---|
3.0.4c-GCC-8.3.0 | 2019b |
Last modified on 12th August 2024