gffutils 0.12-foss-2022a

There is a newer install of gffutils

gffutils is a Python package for working with GFF and GTF files in a hierarchical manner. It allows operations which would be complicated or time-consuming using a text-file-only approach.

Accessing gffutils 0.12-foss-2022a

To load the module for gffutils 0.12-foss-2022a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2022a
module load gffutils/0.12-foss-2022a

BEAR Apps Version

2022a

Architectures

EL8-cascadelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Extensions

• argcomplete 3.1.1
• argh 0.28.1
• gffutils 0.12
• simplejson 3.19.1

More Information

For more information visit the gffutils website.

Dependencies

This version of gffutils has a direct dependency on: Biopython/1.79-foss-2022a foss/2022a pybedtools/0.9.0-GCC-11.3.0 pyfaidx/0.7.1-GCCcore-11.3.0 Python/3.10.4-GCCcore-11.3.0

Required By

This version of gffutils is a direct dependent of: panaroo/1.5.0-foss-2022a

Other Versions

These versions of gffutils are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 25th July 2024