steinbock 0.16.1-foss-2022a

A toolkit for processing multiplexed tissue images

Accessing steinbock 0.16.1-foss-2022a

To load the module for steinbock 0.16.1-foss-2022a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2022a
module load steinbock/0.16.1-foss-2022a

BEAR Apps Version

2022a

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Extensions

• anndata 0.8.0
• click-log-0.4.0
• fcswrite 0.6.2
• steinbock 0.16.1
• xtiff 0.7.8

More Information

For more information visit the steinbock website.

Dependencies

This version of steinbock has a direct dependency on: Cellpose/2.2-foss-2022a foss/2022a h5py/3.7.0-foss-2022a napari/0.4.17-foss-2022a OpenCV/4.6.0-foss-2022a-contrib Python/3.10.4-GCCcore-11.3.0 scikit-image/0.19.3-foss-2022a SciPy-bundle/2022.05-foss-2022a

Last modified on 13th February 2024