PhyloPhlAn 3.0.3-foss-2022b

PhyloPhlAn is an integrated pipeline for large-scale phylogenetic profiling of genomes and metagenomes. PhyloPhlAn is an accurate, rapid, and easy-to-use method for large-scale microbial genome characterization and phylogenetic analysis at multiple levels of resolution.

Accessing PhyloPhlAn 3.0.3-foss-2022b

To load the module for PhyloPhlAn 3.0.3-foss-2022b please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2022b
module load PhyloPhlAn/3.0.3-foss-2022b

BEAR Apps Version

2022b

Architectures

EL8-cascadelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the PhyloPhlAn website.

Dependencies

This version of PhyloPhlAn has a direct dependency on: Biopython/1.81-foss-2022b BLAST+/2.14.0-gompi-2022b DendroPy/4.5.2-GCCcore-12.2.0 DIAMOND/2.1.8-GCC-12.2.0 FastTree/2.1.11-GCCcore-12.2.0 foss/2022b IQ-TREE/2.2.2.6-gompi-2022b MAFFT/7.505-GCC-12.2.0-with-extensions matplotlib/3.7.0-gfbf-2022b MUSCLE/5.1.0-GCCcore-12.2.0 Python/3.10.8-GCCcore-12.2.0 SciPy-bundle/2023.02-gfbf-2022b Seaborn/0.12.2-foss-2022b SEPP/4.5.1-foss-2022b trimAl/1.4.1-GCCcore-12.2.0 USEARCH/11.0.667-i86linux32

Required By

This version of PhyloPhlAn is a direct dependent of: MetaPhlAn/4.1.0-foss-2022b

Other Versions

These versions of PhyloPhlAn are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 28th May 2024