gffutils 0.12-foss-2022b
gffutils is a Python package for working with GFF and GTF files in a hierarchical manner. It allows operations which would be complicated or time-consuming using a text-file-only approach.Accessing gffutils 0.12-foss-2022b
To load the module for gffutils 0.12-foss-2022b please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):
📋
module load bear-apps/2022b
module load gffutils/0.12-foss-2022b
BEAR Apps Version
Architectures
EL8-cascadelake — EL8-icelake — EL8-sapphirerapids
The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
Extensions
- argcomplete 3.1.1
- argh 0.28.1
- gffutils 0.12
- simplejson 3.19.1
- six 1.16.0
More Information
For more information visit the gffutils website.
Dependencies
This version of gffutils has a direct dependency on: Biopython/1.81-foss-2022b foss/2022b pybedtools/0.9.0-GCC-12.2.0 pyfaidx/0.7.2.1-GCCcore-12.2.0 Python/3.10.8-GCCcore-12.2.0
Required By
This version of gffutils is a direct dependent of: clinker/0.0.28-foss-2022b
Other Versions
These versions of gffutils are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.
| Version | BEAR Apps Version |
|---|---|
| 0.12-foss-2022a | 2022a |
| 0.9-foss-2018b-Python-2.7.15 | 2018b |
Last modified on 21st February 2024