Bowtie2 2.5.4-GCC-12.3.0
Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences.Accessing Bowtie2 2.5.4-GCC-12.3.0
To load the module for Bowtie2 2.5.4-GCC-12.3.0 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):
📋
module load bear-apps/2023a
module load Bowtie2/2.5.4-GCC-12.3.0
BEAR Apps Version
Architectures
EL8-cascadelake — EL8-icelake — EL8-sapphirerapids
The listed architectures consist of two parts: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
More Information
For more information visit the Bowtie2 website.
Dependencies
This version of Bowtie2 has a direct dependency on: GCC/12.3.0 Perl/5.36.1-GCCcore-12.3.0 Python/3.11.3-GCCcore-12.3.0 zlib/1.2.13-GCCcore-12.3.0
Required By
This version of Bowtie2 is a direct dependent of: hostile/2.0.0-foss-2023a
Other Versions
These versions of Bowtie2 are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.
| Version | BEAR Apps Version |
|---|---|
| 2.5.1-GCC-12.2.0 | 2022b |
| 2.4.5-GCC-11.3.0 | 2022a |
| 2.4.4-GCC-11.2.0 | 2021b |
| 2.4.4-GCC-10.3.0 | 2021a |
| 2.3.5.1-GCC-8.3.0 | 2019b |
| 2.3.4.2-foss-2018b | 2018b |
Last modified on 6th February 2025