Salmon 1.10.3-GCC-12.3.0
Salmon is a wicked-fast program to produce a highly-accurate, transcript-level quantification estimates from RNA-seq data.Accessing Salmon 1.10.3-GCC-12.3.0
To load the module for Salmon 1.10.3-GCC-12.3.0 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):
📋
module load bear-apps/2023a
module load Salmon/1.10.3-GCC-12.3.0
BEAR Apps Version
Architectures
EL8-cascadelake — EL8-icelake — EL8-sapphirerapids
The listed architectures consist of two parts: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
More Information
For more information visit the Salmon website.
Dependencies
This version of Salmon has a direct dependency on: Boost/1.82.0-GCC-12.3.0 bzip2/1.0.8-GCCcore-12.3.0 cURL/8.0.1-GCCcore-12.3.0 GCC/12.3.0 libiconv/1.17-GCCcore-12.3.0 tbb/2021.11.0-GCCcore-12.3.0 XZ/5.4.2-GCCcore-12.3.0 zlib/1.2.13-GCCcore-12.3.0
Required By
This version of Salmon is a direct dependent of: metaWRAP/1.4-20230728-foss-2023a-Python-2.7.18
Other Versions
These versions of Salmon are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.
| Version | BEAR Apps Version |
|---|---|
| 1.10.1-GCC-12.2.0 | 2022b |
| 1.9.0-GCC-11.3.0 | 2022a |
| 1.9.0-GCC-11.2.0 | 2021b |
| 1.5.2-gompi-2020b | 2020b |
| 1.1.0-gompi-2019b | 2019b |
| 0.12.0-foss-2018b | 2018b |
Last modified on 4th March 2025