BEDTools

The BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps and computing coverage. The utilities are largely based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM.

More Information

For more information visit the BEDTools website.

Available Versions

These versions of BEDTools are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Version	BEAR Apps Version
2.30.0-GCC-12.2.0	2022b
2.30.0-GCC-11.3.0	2022a
2.30.0-GCC-11.2.0	2021b
2.30.0-GCC-10.3.0	2021a
2.30.0-GCC-10.2.0	2020b
2.29.2-GCC-9.3.0	2020a
2.29.2-GCC-8.3.0	2019b
2.28.0-GCC-8.2.0-2.31.1	2019a
2.25.0-foss-2018b	2018b