SAMtools

SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format.

More Information

For more information visit the SAMtools website.

Available Versions

These versions of SAMtools are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Version	BEAR Apps Version
1.17-GCC-12.2.0	2022b
1.16.1-GCC-11.3.0	2022a
1.15.1-GCC-11.2.0	2021b
1.12-GCC-10.3.0	2021a
1.11-GCC-10.2.0	2020b
1.10-GCC-9.3.0	2020a
1.10-GCC-8.3.0	2019b
0.1.20-GCC-11.3.0	2022a
0.1.19-GCC-10.3.0	2021a
1.9-GCC-8.2.0-2.31.1	2019a
1.9-foss-2018b	2018b
0.1.20-foss-2018b	2018b
0.1.18-foss-2018b	2018b