Installed Applications: 2023a

Applications available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). In any one job, or session, you should use applications from only one BEAR Apps Version.

Application Version
Abseil 20230125.3-GCCcore-12.3.0
absl-py 2.1.0-GCCcore-12.3.0
AdmixTools 8.0.2-foss-2023a-R-4.4.1-Perl-5.36.1
aiohttp 3.8.5-GCCcore-12.3.0
alsa-lib 1.2.10
ant 1.10.14-Java-11
Archive-Zip 1.68-GCCcore-12.3.0
Armadillo 12.6.2-foss-2023a
arpack-ng 3.9.0-foss-2023a
Arrow 14.0.1-gfbf-2023a
arrow-R 14.0.1-foss-2023a-R-4.4.1
ArviZ 0.16.1-foss-2023a
ASE 3.22.1-gfbf-2023a
ATK 2.38.0-GCCcore-12.3.0
at-spi2-atk 2.38.0-GCCcore-12.3.0
at-spi2-core 2.49.91-GCCcore-12.3.0
Autoconf 2.71-GCCcore-12.3.0
Automake 1.16.5-GCCcore-12.3.0
Autotools 20220317-GCCcore-12.3.0
Bazel 6.3.1-GCCcore-12.3.0
Bazel 6.1.0-GCCcore-12.3.0
BCFtools 1.20-GCC-12.3.0
BEAR-R-bio 2023a-foss-2023a-R-4.4.1
BeautifulSoup 4.12.2-GCCcore-12.3.0
binutils 2.40-GCCcore-12.3.0
binutils 2.40
Bio-DB-HTS 3.01-GCC-12.3.0
BioPerl 1.7.8-GCCcore-12.3.0
Biopython 1.83-foss-2023a
Bison 3.8.2-GCCcore-12.3.0
Bison 3.8.2
BLIS 0.9.0-GCC-12.3.0
bokeh 3.2.2-foss-2023a
Boost 1.82.0-GCC-12.3.0
boto3 1.28.70-GCCcore-12.3.0
Brotli 1.0.9-GCCcore-12.3.0
Brunsli 0.1-GCCcore-12.3.0
bzip2 1.0.8-GCCcore-12.3.0
cads-api-client 1.5.0-GCCcore-12.3.0
cairo 1.17.8-GCCcore-12.3.0
Cartopy 0.22.0-foss-2023a
CASTEP 24.1-foss-2023a
Catch2 2.13.9-GCCcore-12.3.0
CDO 2.2.2-gompi-2023a
cdsapi 0.7.4-GCCcore-12.3.0
cffi 1.15.1-GCCcore-12.3.0
CFITSIO 4.3.0-GCCcore-12.3.0
CGAL 5.6-GCCcore-12.3.0
CMake 3.26.3-GCCcore-12.3.0
contextily 1.5.0-foss-2023a
cppy 1.2.1-GCCcore-12.3.0
cryptography 41.0.1-GCCcore-12.3.0
CUDA 12.1.1
cuDNN 8.9.2.26-CUDA-12.1.1
cURL 8.0.1-GCCcore-12.3.0
Cython 3.0.8-GCCcore-12.3.0
dask 2023.9.2-foss-2023a
DB 18.1.40-GCCcore-12.3.0
DBD-mysql 4.052-GCC-12.3.0
DB_File 1.859-GCCcore-12.3.0
DBus 1.15.4-GCCcore-12.3.0
deepdiff 6.7.1-GCCcore-12.3.0
DFTB+ 23.1-foss-2023a
dftd4 3.7.0-foss-2023a
dill 0.3.7-GCCcore-12.3.0
dorado 0.8.0-foss-2023a-CUDA-12.1.1
double-conversion 3.3.0-GCCcore-12.3.0
Doxygen 1.9.7-GCCcore-12.3.0
earthengine-api 0.1.413-foss-2023a
earthpy 0.9.4-foss-2023a
ecBuild 3.8.0
ecCodes 2.31.0-gompi-2023a
edk 2.1.1.0
Eigen 3.4.0-GCCcore-12.3.0
EIGENSOFT 8.0.0-foss-2023a
einops 0.7.0-GCCcore-12.3.0
elfutils 0.189-GCCcore-12.3.0
ELPA 2023.05.001-foss-2023a
ELSI 2.11.0-foss-2023a-PEXSI
expat 2.5.0-GCCcore-12.3.0
expecttest 0.1.5-GCCcore-12.3.0
FFmpeg 6.0-GCCcore-12.3.0
ffnvcodec 12.0.16.0
FFTW 3.3.10-GCC-12.3.0
FFTW.MPI 3.3.10-gompi-2023a
Fiona 1.9.5-foss-2023a
FLAC 1.4.2-GCCcore-12.3.0
Flask 2.3.3-GCCcore-12.3.0
flatbuffers 23.5.26-GCCcore-12.3.0
flatbuffers-python 23.5.26-GCCcore-12.3.0
flex 2.6.4-GCCcore-12.3.0
flex 2.6.4
FlexiBLAS 3.3.1-GCC-12.3.0
flit 3.9.0-GCCcore-12.3.0
fontconfig 2.14.2-GCCcore-12.3.0
foss 2023a
freetype 2.13.0-GCCcore-12.3.0
FriBidi 1.0.12-GCCcore-12.3.0
FUSE 3.16.2-GCCcore-12.3.0
GCC 12.3.0
GCCcore 12.3.0
gcsfs 2023.12.2.post1-foss-2023a
GDAL 3.7.1-foss-2023a
Gdk-Pixbuf 2.42.10-GCCcore-12.3.0
GDRCopy 2.3.1-GCCcore-12.3.0
GenomeTools 1.6.5-GCC-12.3.0
geopandas 0.14.2-foss-2023a
geopy 2.4.1-GCCcore-12.3.0
GEOS 3.12.0-GCC-12.3.0
gettext 0.22
gettext 0.21.1-GCCcore-12.3.0
gettext 0.21.1
gfbf 2023a
Ghostscript 10.01.2-GCCcore-12.3.0
giflib 5.2.1-GCCcore-12.3.0
git 2.41.0-GCCcore-12.3.0-nodocs
GLib 2.77.1-GCCcore-12.3.0
GLPK 5.0-GCCcore-12.3.0
GMP 6.2.1-GCCcore-12.3.0
gmpy2 2.1.5-GCC-12.3.0
gnuplot 5.4.8-GCCcore-12.3.0
Go 1.22.1
GObject-Introspection 1.76.1-GCCcore-12.3.0
gompi 2023a
googletest 1.13.0-GCCcore-12.3.0
GoPeaks 1.0.0
GPAW 23.9.1-foss-2023a
GPAW-setups 24.1.0
gperf 3.1-GCCcore-12.3.0
GRAPE 0.2.4-foss-2023a
Graphene 1.10.8-GCCcore-12.3.0
graphite2 1.3.14-GCCcore-12.3.0
Graphviz 8.1.0-GCCcore-12.3.0
groff 1.22.4-GCCcore-12.3.0
grpcio 1.57.0-GCCcore-12.3.0
GSL 2.7-intel-compilers-2023.1.0
GSL 2.7-GCC-12.3.0
GST-plugins-bad 1.22.5-GCC-12.3.0
GST-plugins-base 1.22.5-GCC-12.3.0
GStreamer 1.22.5-GCC-12.3.0
GTK3 3.24.37-GCCcore-12.3.0
GTK4 4.13.1-GCC-12.3.0
GTS 0.7.6-GCCcore-12.3.0
Gurobi 11.0.0-GCCcore-12.3.0
gzip 1.12-GCCcore-12.3.0
h5netcdf 1.2.0-foss-2023a
h5py 3.9.0-foss-2023a
HarfBuzz 5.3.1-GCCcore-12.3.0
hatchling 1.18.0-GCCcore-12.3.0
HDBSCAN 0.8.39-gfbf-2023a
HDF 4.2.16-2-GCCcore-12.3.0
HDF5 1.14.0-iimpi-2023a
HDF5 1.14.0-gompi-2023a
help2man 1.49.3-GCCcore-12.3.0
HF-Datasets 2.18.0-gfbf-2023a
Highway 1.0.4-GCCcore-12.3.0
HPL 2.3-intel-2023a
HPL 2.3-foss-2023a
hssm 0.2.2-foss-2023a
HTSlib 1.20-GCC-12.3.0
HTSlib 1.18-GCC-12.3.0
hwloc 2.9.1-GCCcore-12.3.0
hypothesis 6.82.0-GCCcore-12.3.0
ICU 73.2-GCCcore-12.3.0
iimpi 2023a
imageio 2.33.1-gfbf-2023a
ImageMagick 7.1.1-15-GCCcore-12.3.0
Imath 3.1.7-GCCcore-12.3.0
imkl 2023.1.0
imkl-FFTW 2023.1.0-iimpi-2023a
impi 2021.9.0-intel-compilers-2023.1.0
intel 2023a
intel-compilers 2023.1.0
InterProScan 5.70-102.0-foss-2023a
InterProScan 5.68-100.0-foss-2023a
intltool 0.51.0-GCCcore-12.3.0
ipykernel 6.25.1-GCCcore-12.3.0
IPython 8.14.0-GCCcore-12.3.0
IQ-TREE 2.3.6-gompi-2023a
IRkernel 1.3.2-gfbf-2023a-R-4.4.1
JasPer 4.0.0-GCCcore-12.3.0
Java 17.0.6
Java 11.0.20
Java 11
jax 0.4.25-gfbf-2023a
jbigkit 2.1-GCCcore-12.3.0
jemalloc 5.3.0-GCCcore-12.3.0
json-c 0.16-GCCcore-12.3.0
JsonCpp 1.9.5-GCCcore-12.3.0
json-fortran 9.0.2-GCC-12.3.0
Judy 1.0.5-GCCcore-12.3.0
KaHIP 3.16-gompi-2023a
Kaleido 0.2.1-GCCcore-12.3.0
kineto 0.4.0-GCC-12.3.0
LAME 3.100-GCCcore-12.3.0
LangChain 0.2.1-foss-2023a
langchain-openai 0.1.8-foss-2023a
LERC 4.0.0-GCCcore-12.3.0
libaec 1.0.6-GCCcore-12.3.0
libaio 0.3.113-GCCcore-12.3.0
libarchive 3.6.2-GCCcore-12.3.0
libcerf 2.3-GCCcore-12.3.0
libdeflate 1.18-GCCcore-12.3.0
libdrm 2.4.115-GCCcore-12.3.0
libepoxy 1.5.10-GCCcore-12.3.0
libevent 2.1.12-GCCcore-12.3.0
libfabric 1.18.0-GCCcore-12.3.0
libffi 3.4.4-GCCcore-12.3.0
libgd 2.3.3-GCCcore-12.3.0
libgeotiff 1.7.1-GCCcore-12.3.0
libgit2 1.7.1-GCCcore-12.3.0
libGLU 9.0.3-GCCcore-12.3.0
libglvnd 1.6.0-GCCcore-12.3.0
libiconv 1.17-GCCcore-12.3.0
libjpeg-turbo 2.1.5.1-GCCcore-12.3.0
libmbd 0.12.6-foss-2023a
libogg 1.3.5-GCCcore-12.3.0
libopus 1.4-GCCcore-12.3.0
libpciaccess 0.17-GCCcore-12.3.0
libpng 1.6.39-GCCcore-12.3.0
libreadline 8.2-GCCcore-12.3.0
libsndfile 1.2.2-GCCcore-12.3.0
libsodium 1.0.18-GCCcore-12.3.0
libspatialindex 1.9.3-GCCcore-12.3.0
LibTIFF 4.5.0-GCCcore-12.3.0
libtirpc 1.3.3-GCCcore-12.3.0
libtool 2.4.7-GCCcore-12.3.0
libunwind 1.6.2-GCCcore-12.3.0
libvdwxc 0.4.0-foss-2023a
libvorbis 1.3.7-GCCcore-12.3.0
libwebp 1.3.1-GCCcore-12.3.0
libxc 6.2.2-GCC-12.3.0
libxml2 2.11.4-GCCcore-12.3.0
libxslt 1.1.38-GCCcore-12.3.0
libyaml 0.2.5-GCCcore-12.3.0
Lightning 2.2.1-foss-2023a-CUDA-12.1.1
Lightning 2.2.1-foss-2023a
LittleCMS 2.15-GCCcore-12.3.0
LLVM 16.0.6-GCCcore-12.3.0
LLVM 14.0.6-GCCcore-12.3.0-llvmlite
LSD2 2.4.1-GCCcore-12.3.0
Lua 5.4.6-GCCcore-12.3.0
lxml 4.9.2-GCCcore-12.3.0
lz4 1.9.4-GCCcore-12.3.0
LZO 2.10-GCCcore-12.3.0
M4 1.4.19-GCCcore-12.3.0
M4 1.4.19
magma 2.7.2-foss-2023a-CUDA-12.1.1
make 4.4.1-GCCcore-12.3.0
Mako 1.2.4-GCCcore-12.3.0
MariaDB 11.6.0-GCC-12.3.0
MATIO 1.5.26-GCCcore-12.3.0
matplotlib 3.7.2-gfbf-2023a
maturin 1.4.0-GCCcore-12.3.0-Rust-1.75.0
mctc-lib 0.3.1-GCC-12.3.0
Mesa 23.1.4-GCCcore-12.3.0
Meson 1.1.1-GCCcore-12.3.0
meson-python 0.13.2-GCCcore-12.3.0
METIS 5.1.0-GCCcore-12.3.0
mixedploidy-entropy 2.0-iimpi-2023a
ml_dtypes 0.3.2-gfbf-2023a
MNE-Python 1.7.1-foss-2023a
modbam2bed 0.5.3-gfbf-2023a
modbamtools 0.4.8-gfbf-2023a
modkit 0.4.0-GCCcore-12.3.0
MPC 1.3.1-GCCcore-12.3.0
MPFR 4.2.0-GCCcore-12.3.0
mpi4py 3.1.4-gompi-2023a
mstore 0.3.0-GCC-12.3.0
multicharge 0.3.0-gfbf-2023a
NASM 2.16.01-GCCcore-12.3.0
NCCL 2.18.3-GCCcore-12.3.0-CUDA-12.1.1
ncurses 6.4-GCCcore-12.3.0
ncurses 6.4
ncurses 6.3
netCDF 4.9.2-gompi-2023a
netcdf4-python 1.6.4-foss-2023a
nettle 3.9.1-GCCcore-12.3.0
networkx 3.1-gfbf-2023a
Newton-X 2.6-b01-GCCcore-12.3.0
NGenomeSyn 1.41-GCC-12.3.0-Perl-5.36.1
NiBabel 5.2.0-gfbf-2023a
Nilearn 0.10.3-gfbf-2023a
Ninja 1.11.1-GCCcore-12.3.0
nlohmann_json 3.11.2-GCCcore-12.3.0
NLopt 2.7.1-GCCcore-12.3.0
nodejs 18.17.1-GCCcore-12.3.0
NSPR 4.35-GCCcore-12.3.0
NSS 3.89.1-GCCcore-12.3.0
nsync 1.26.0-GCCcore-12.3.0
NTPoly 3.1.0-foss-2023a
numactl 2.0.16-GCCcore-12.3.0
numba 0.58.1-foss-2023a
ONNX 1.15.0-gfbf-2023a
openai-python 1.30.5-foss-2023a
OpenBLAS 0.3.23-GCC-12.3.0
OpenCV 4.8.1-foss-2023a-CUDA-12.1.1-contrib
OpenCV 4.8.1-foss-2023a-contrib
OpenEXR 3.1.7-GCCcore-12.3.0
OpenFOAM (OpenCFD Ltd) v2406-foss-2023a
OpenFOAM (The OpenFOAM Foundation) 12-foss-2023a
OpenJPEG 2.5.0-GCCcore-12.3.0
OpenMEEG 2.5.7-foss-2023a
OpenMPI 4.1.5-GCC-12.3.0
OpenPGM 5.2.122-GCCcore-12.3.0
OpenSSL 1.1
ORCA 6.0.0-gompi-2023a
OSU-Micro-Benchmarks 7.1-1-iimpi-2023a
OSU-Micro-Benchmarks 7.1-1-gompi-2023a
Pango 1.50.14-GCCcore-12.3.0
ParaView 5.11.2-foss-2023a
ParMETIS 4.0.3-gompi-2023a
patchelf 0.18.0-GCCcore-12.3.0
PCRE 8.45-GCCcore-12.3.0
PCRE2 10.42-GCCcore-12.3.0
PDM 2.12.4-GCCcore-12.3.0
Perl 5.36.1-GCCcore-12.3.0
Perl-bundle-CPAN 5.36.1-GCCcore-12.3.0
PhyKIT 1.19.9-foss-2023a
Pillow 10.0.0-GCCcore-12.3.0
Pillow-SIMD 9.5.0-GCCcore-12.3.0
pixman 0.42.2-GCCcore-12.3.0
pkgconf 1.9.5-GCCcore-12.3.0
pkgconf 1.8.0
pkgconfig 1.5.5-GCCcore-12.3.0-python
Planet 2.10.0-gfbf-2023a
plotly.py 5.16.0-GCCcore-12.3.0
PLY 3.11-GCCcore-12.3.0
PMIx 4.2.4-GCCcore-12.3.0
poetry 1.7.1-GCCcore-12.3.0
poetry 1.5.1-GCCcore-12.3.0
PostgreSQL 16.1-GCCcore-12.3.0
PROJ 9.2.0-GCCcore-12.3.0
protobuf 24.0-GCCcore-12.3.0
protobuf-python 4.24.0-GCCcore-12.3.0
psutil 5.9.8-GCCcore-12.3.0
psycopg2 2.9.9-GCCcore-12.3.0
pyBigWig 0.3.22-gfbf-2023a
pybind11 2.11.1-GCCcore-12.3.0
PyCairo 1.25.0-GCCcore-12.3.0
PyCharm 2024.2.2
py-cpuinfo 9.0.0-GCCcore-12.3.0
pydantic 2.5.3-GCCcore-12.3.0
pydicom 2.4.4-GCCcore-12.3.0
PyGObject 3.46.0-GCCcore-12.3.0
Pympler 1.1-GCCcore-12.3.0
pyproj 3.6.0-GCCcore-12.3.0
PyQt5 5.15.10-GCCcore-12.3.0
PyQt-builder 1.15.4-GCCcore-12.3.0
Pysam 0.22.0-GCC-12.3.0
PyTensor 2.17.1-gfbf-2023a
pytest 7.4.2-GCCcore-12.3.0
pytest-flakefinder 1.1.0-GCCcore-12.3.0
pytest-rerunfailures 12.0-GCCcore-12.3.0
pytest-shard 0.1.2-GCCcore-12.3.0
pytest-xdist 3.3.1-GCCcore-12.3.0
Python 3.11.3-GCCcore-12.3.0
Python-bundle-PyPI 2023.06-GCCcore-12.3.0
python-cdo 1.6.0-foss-2023a
python-xxhash 3.4.1-GCCcore-12.3.0
PyTorch 2.1.2-foss-2023a-CUDA-12.1.1
PyTorch 2.1.2-foss-2023a
PyTorch-Lightning 2.2.1-foss-2023a-CUDA-12.1.1
PyTorch-Lightning 2.2.1-foss-2023a
PyYAML 6.0-GCCcore-12.3.0
PyZMQ 25.1.1-GCCcore-12.3.0
Qhull 2020.2-GCCcore-12.3.0
Qt5 5.15.10-GCCcore-12.3.0
QuantumESPRESSO 7.3-foss-2023a
R 4.4.1-gfbf-2023a
RapidJSON 1.1.0-20230928-GCCcore-12.3.0
rasterio 1.3.9-foss-2023a
rasterstats 0.19.0-foss-2023a
R-bundle-Bioconductor 3.19-foss-2023a-R-4.4.1
R-bundle-CRAN 2024.06-foss-2023a
RE2 2023-08-01-GCCcore-12.3.0
re2c 3.1-GCCcore-12.3.0
rnamotif 20240904-GCCcore-12.3.0
Rtree 1.2.0-GCCcore-12.3.0
Ruby 3.3.0-GCCcore-12.3.0
Rust 1.79.0-GCCcore-12.3.0
Rust 1.75.0-GCCcore-12.3.0
Rust 1.70.0-GCCcore-12.3.0
ScaLAPACK 2.2.0-gompi-2023a-fb
scikit_allel 1.3.11-foss-2023a
scikit-build 0.17.6-GCCcore-12.3.0
scikit-build-core 0.5.0-GCCcore-12.3.0
scikit-image 0.22.0-foss-2023a
scikit-learn 1.4.2-gfbf-2023a
scikit-learn 1.3.1-gfbf-2023a
SciPy-bundle 2023.07-gfbf-2023a
SCOTCH 7.0.3-gompi-2023a
SDL2 2.28.2-GCCcore-12.3.0
Seaborn 0.13.2-gfbf-2023a
sentinelsat 1.2.1-GCCcore-12.3.0
setuptools-rust 1.6.0-GCCcore-12.3.0
Shapely 2.0.1-gfbf-2023a
SIP 6.8.1-GCCcore-12.3.0
snappy 1.1.10-GCCcore-12.3.0
SNPTEST 2.5.6
spglib-python 2.1.0-gfbf-2023a
SQLAlchemy 2.0.25-GCCcore-12.3.0
SQLite 3.42.0-GCCcore-12.3.0
statsmodels 0.14.1-gfbf-2023a
SVG 2.87-GCC-12.3.0
SWIG 4.1.1-GCCcore-12.3.0
sympy 1.12-gfbf-2023a
Szip 2.1.1-GCCcore-12.3.0
tblite 0.3.0-foss-2023a
Tcl 8.6.13-GCCcore-12.3.0
tensorboard 2.15.1-gfbf-2023a
tensorboardX 2.6.2.2-foss-2023a
TensorFlow 2.15.1-foss-2023a
tiktoken 0.7.0-GCCcore-12.3.0
Tk 8.6.13-GCCcore-12.3.0
Tkinter 3.11.3-GCCcore-12.3.0
TorchGeo 0.6.0-foss-2023a-CUDA-12.1.1
TorchGeo 0.6.0-foss-2023a
torchvision 0.16.0-foss-2023a-CUDA-12.1.1
torchvision 0.16.0-foss-2023a
tornado 6.3.2-GCCcore-12.3.0
tqdm 4.66.1-GCCcore-12.3.0
typing-extensions 4.9.0-GCCcore-12.3.0
UCC 1.2.0-GCCcore-12.3.0
UCX 1.14.1-GCCcore-12.3.0
UCX-CUDA 1.14.1-GCCcore-12.3.0-CUDA-12.1.1
UDUNITS 2.2.28-GCCcore-12.3.0
Ultralytics 8.2.90-foss-2023a-CUDA-12.1.1
Ultralytics 8.2.90-foss-2023a
UnZip 6.0-GCCcore-12.3.0
utf8proc 2.8.0-GCCcore-12.3.0
util-linux 2.39-GCCcore-12.3.0
VEP 113-GCC-12.3.0
virtualenv 20.23.1-GCCcore-12.3.0
VTK 9.3.0-foss-2023a
Wayland 1.22.0-GCCcore-12.3.0
X11 20230603-GCCcore-12.3.0
x264 20230226-GCCcore-12.3.0
x265 3.5-GCCcore-12.3.0
xarray 2023.9.0-gfbf-2023a
Xerces-C++ 3.2.4-GCCcore-12.3.0
XML-LibXML 2.0209-GCCcore-12.3.0
xorg-macros 1.20.0-GCCcore-12.3.0
xpclr 1.1.2-foss-2023a
Xvfb 21.1.8-GCCcore-12.3.0
xxHash 0.8.2-GCCcore-12.3.0
XZ 5.4.2-GCCcore-12.3.0
Yasm 1.3.0-GCCcore-12.3.0
Z3 4.12.2-GCCcore-12.3.0
zarr 2.17.1-foss-2023a
ZeroMQ 4.3.4-GCCcore-12.3.0
Zip 3.0-GCCcore-12.3.0
zlib 1.2.13-GCCcore-12.3.0
zlib 1.2.13
Zoltan 3.901-foss-2023a
zstd 1.5.5-GCCcore-12.3.0