Installed Applications: 2023a and EL8-sapphirerapids

Applications available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). All 2023a or EL8-sapphirerapids applications. In any one job, or session, you should use applications from only one BEAR Apps Version.

Application Version
Abseil 20230125.3-GCCcore-12.3.0
absl-py 2.1.0-GCCcore-12.3.0
AdmixTools 8.0.2-foss-2023a-R-4.4.1-Perl-5.36.1
aiohttp 3.8.5-GCCcore-12.3.0
alsa-lib 1.2.10
ant 1.10.14-Java-11
Archive-Zip 1.68-GCCcore-12.3.0
Armadillo 12.6.2-foss-2023a
arpack-ng 3.9.0-foss-2023a
Arrow 14.0.1-gfbf-2023a
arrow-R 14.0.1-foss-2023a-R-4.4.1
ArviZ 0.16.1-foss-2023a
ASE 3.22.1-gfbf-2023a
ATK 2.38.0-GCCcore-12.3.0
at-spi2-atk 2.38.0-GCCcore-12.3.0
at-spi2-core 2.49.91-GCCcore-12.3.0
Autoconf 2.71-GCCcore-12.3.0
Automake 1.16.5-GCCcore-12.3.0
Autotools 20220317-GCCcore-12.3.0
Bazel 6.3.1-GCCcore-12.3.0
Bazel 6.1.0-GCCcore-12.3.0
BCFtools 1.20-GCC-12.3.0
BEAR-R-bio 2023a-foss-2023a-R-4.4.1
BeautifulSoup 4.12.2-GCCcore-12.3.0
binutils 2.40-GCCcore-12.3.0
binutils 2.40
Bio-DB-HTS 3.01-GCC-12.3.0
BioPerl 1.7.8-GCCcore-12.3.0
Biopython 1.83-foss-2023a
Bison 3.8.2-GCCcore-12.3.0
Bison 3.8.2
BLIS 0.9.0-GCC-12.3.0
bokeh 3.2.2-foss-2023a
Boost 1.82.0-GCC-12.3.0
boto3 1.28.70-GCCcore-12.3.0
Brotli 1.0.9-GCCcore-12.3.0
Brunsli 0.1-GCCcore-12.3.0
bzip2 1.0.8-GCCcore-12.3.0
cads-api-client 1.5.0-GCCcore-12.3.0
cairo 1.17.8-GCCcore-12.3.0
Cartopy 0.22.0-foss-2023a
CASTEP 24.1-foss-2023a
Catch2 2.13.9-GCCcore-12.3.0
CDO 2.2.2-gompi-2023a
cdsapi 0.7.4-GCCcore-12.3.0
cffi 1.15.1-GCCcore-12.3.0
CFITSIO 4.3.0-GCCcore-12.3.0
CGAL 5.6-GCCcore-12.3.0
CMake 3.26.3-GCCcore-12.3.0
contextily 1.5.0-foss-2023a
cppy 1.2.1-GCCcore-12.3.0
cryptography 41.0.1-GCCcore-12.3.0
cURL 8.0.1-GCCcore-12.3.0
Cython 3.0.8-GCCcore-12.3.0
dask 2023.9.2-foss-2023a
DB 18.1.40-GCCcore-12.3.0
DBD-mysql 4.052-GCC-12.3.0
DB_File 1.859-GCCcore-12.3.0
DBus 1.15.4-GCCcore-12.3.0
deepdiff 6.7.1-GCCcore-12.3.0
DFTB+ 23.1-foss-2023a
dftd4 3.7.0-foss-2023a
dill 0.3.7-GCCcore-12.3.0
double-conversion 3.3.0-GCCcore-12.3.0
Doxygen 1.9.7-GCCcore-12.3.0
earthengine-api 0.1.413-foss-2023a
earthpy 0.9.4-foss-2023a
ecBuild 3.8.0
ecCodes 2.31.0-gompi-2023a
edk 2.1.1.0
Eigen 3.4.0-GCCcore-12.3.0
EIGENSOFT 8.0.0-foss-2023a
einops 0.7.0-GCCcore-12.3.0
elfutils 0.189-GCCcore-12.3.0
ELPA 2023.05.001-foss-2023a
ELSI 2.11.0-foss-2023a-PEXSI
expat 2.5.0-GCCcore-12.3.0
expecttest 0.1.5-GCCcore-12.3.0
FFmpeg 6.0-GCCcore-12.3.0
ffnvcodec 12.0.16.0
FFTW 3.3.10-GCC-12.3.0
FFTW.MPI 3.3.10-gompi-2023a
Fiona 1.9.5-foss-2023a
FLAC 1.4.2-GCCcore-12.3.0
Flask 2.3.3-GCCcore-12.3.0
flatbuffers 23.5.26-GCCcore-12.3.0
flatbuffers-python 23.5.26-GCCcore-12.3.0
flex 2.6.4-GCCcore-12.3.0
flex 2.6.4
FlexiBLAS 3.3.1-GCC-12.3.0
flit 3.9.0-GCCcore-12.3.0
fontconfig 2.14.2-GCCcore-12.3.0
foss 2023a
freetype 2.13.0-GCCcore-12.3.0
FriBidi 1.0.12-GCCcore-12.3.0
FUSE 3.16.2-GCCcore-12.3.0
GCC 12.3.0
GCCcore 12.3.0
gcsfs 2023.12.2.post1-foss-2023a
GDAL 3.7.1-foss-2023a
Gdk-Pixbuf 2.42.10-GCCcore-12.3.0
GenomeTools 1.6.5-GCC-12.3.0
geopandas 0.14.2-foss-2023a
geopy 2.4.1-GCCcore-12.3.0
GEOS 3.12.0-GCC-12.3.0
gettext 0.22
gettext 0.21.1-GCCcore-12.3.0
gettext 0.21.1
gfbf 2023a
Ghostscript 10.01.2-GCCcore-12.3.0
giflib 5.2.1-GCCcore-12.3.0
git 2.41.0-GCCcore-12.3.0-nodocs
GLib 2.77.1-GCCcore-12.3.0
GLPK 5.0-GCCcore-12.3.0
GMP 6.2.1-GCCcore-12.3.0
gmpy2 2.1.5-GCC-12.3.0
gnuplot 5.4.8-GCCcore-12.3.0
Go 1.22.1
GObject-Introspection 1.76.1-GCCcore-12.3.0
gompi 2023a
googletest 1.13.0-GCCcore-12.3.0
GoPeaks 1.0.0
GPAW 23.9.1-foss-2023a
GPAW-setups 24.1.0
gperf 3.1-GCCcore-12.3.0
GRAPE 0.2.4-foss-2023a
Graphene 1.10.8-GCCcore-12.3.0
graphite2 1.3.14-GCCcore-12.3.0
Graphviz 8.1.0-GCCcore-12.3.0
groff 1.22.4-GCCcore-12.3.0
grpcio 1.57.0-GCCcore-12.3.0
GSL 2.7-intel-compilers-2023.1.0
GSL 2.7-GCC-12.3.0
GST-plugins-bad 1.22.5-GCC-12.3.0
GST-plugins-base 1.22.5-GCC-12.3.0
GStreamer 1.22.5-GCC-12.3.0
GTK3 3.24.37-GCCcore-12.3.0
GTK4 4.13.1-GCC-12.3.0
GTS 0.7.6-GCCcore-12.3.0
Gurobi 11.0.0-GCCcore-12.3.0
gzip 1.12-GCCcore-12.3.0
h5netcdf 1.2.0-foss-2023a
h5py 3.9.0-foss-2023a
HarfBuzz 5.3.1-GCCcore-12.3.0
hatchling 1.18.0-GCCcore-12.3.0
HDBSCAN 0.8.39-gfbf-2023a
HDF 4.2.16-2-GCCcore-12.3.0
HDF5 1.14.0-iimpi-2023a
HDF5 1.14.0-gompi-2023a
help2man 1.49.3-GCCcore-12.3.0
HF-Datasets 2.18.0-gfbf-2023a
Highway 1.0.4-GCCcore-12.3.0
HPL 2.3-intel-2023a
HPL 2.3-foss-2023a
hssm 0.2.2-foss-2023a
HTSlib 1.20-GCC-12.3.0
HTSlib 1.18-GCC-12.3.0
hwloc 2.9.1-GCCcore-12.3.0
hypothesis 6.82.0-GCCcore-12.3.0
ICU 73.2-GCCcore-12.3.0
iimpi 2023a
imageio 2.33.1-gfbf-2023a
ImageMagick 7.1.1-15-GCCcore-12.3.0
Imath 3.1.7-GCCcore-12.3.0
imkl 2023.1.0
imkl-FFTW 2023.1.0-iimpi-2023a
impi 2021.9.0-intel-compilers-2023.1.0
intel 2023a
intel-compilers 2023.1.0
InterProScan 5.70-102.0-foss-2023a
InterProScan 5.68-100.0-foss-2023a
intltool 0.51.0-GCCcore-12.3.0
ipykernel 6.25.1-GCCcore-12.3.0
IPython 8.14.0-GCCcore-12.3.0
IQ-TREE 2.3.6-gompi-2023a
IRkernel 1.3.2-gfbf-2023a-R-4.4.1
JasPer 4.0.0-GCCcore-12.3.0
Java 17.0.6
Java 11.0.20
Java 11
jax 0.4.25-gfbf-2023a
jbigkit 2.1-GCCcore-12.3.0
jemalloc 5.3.0-GCCcore-12.3.0
json-c 0.16-GCCcore-12.3.0
JsonCpp 1.9.5-GCCcore-12.3.0
json-fortran 9.0.2-GCC-12.3.0
Judy 1.0.5-GCCcore-12.3.0
KaHIP 3.16-gompi-2023a
Kaleido 0.2.1-GCCcore-12.3.0
LAME 3.100-GCCcore-12.3.0
LangChain 0.2.1-foss-2023a
langchain-openai 0.1.8-foss-2023a
LERC 4.0.0-GCCcore-12.3.0
libaec 1.0.6-GCCcore-12.3.0
libaio 0.3.113-GCCcore-12.3.0
libarchive 3.6.2-GCCcore-12.3.0
libcerf 2.3-GCCcore-12.3.0
libdeflate 1.18-GCCcore-12.3.0
libdrm 2.4.115-GCCcore-12.3.0
libepoxy 1.5.10-GCCcore-12.3.0
libevent 2.1.12-GCCcore-12.3.0
libfabric 1.18.0-GCCcore-12.3.0
libffi 3.4.4-GCCcore-12.3.0
libgd 2.3.3-GCCcore-12.3.0
libgeotiff 1.7.1-GCCcore-12.3.0
libgit2 1.7.1-GCCcore-12.3.0
libGLU 9.0.3-GCCcore-12.3.0
libglvnd 1.6.0-GCCcore-12.3.0
libiconv 1.17-GCCcore-12.3.0
libjpeg-turbo 2.1.5.1-GCCcore-12.3.0
libmbd 0.12.6-foss-2023a
libogg 1.3.5-GCCcore-12.3.0
libopus 1.4-GCCcore-12.3.0
libpciaccess 0.17-GCCcore-12.3.0
libpng 1.6.39-GCCcore-12.3.0
libreadline 8.2-GCCcore-12.3.0
libsndfile 1.2.2-GCCcore-12.3.0
libsodium 1.0.18-GCCcore-12.3.0
libspatialindex 1.9.3-GCCcore-12.3.0
LibTIFF 4.5.0-GCCcore-12.3.0
libtirpc 1.3.3-GCCcore-12.3.0
libtool 2.4.7-GCCcore-12.3.0
libunwind 1.6.2-GCCcore-12.3.0
libvdwxc 0.4.0-foss-2023a
libvorbis 1.3.7-GCCcore-12.3.0
libwebp 1.3.1-GCCcore-12.3.0
libxc 6.2.2-GCC-12.3.0
libxml2 2.11.4-GCCcore-12.3.0
libxslt 1.1.38-GCCcore-12.3.0
libyaml 0.2.5-GCCcore-12.3.0
Lightning 2.2.1-foss-2023a
LittleCMS 2.15-GCCcore-12.3.0
LLVM 16.0.6-GCCcore-12.3.0
LLVM 14.0.6-GCCcore-12.3.0-llvmlite
LSD2 2.4.1-GCCcore-12.3.0
Lua 5.4.6-GCCcore-12.3.0
lxml 4.9.2-GCCcore-12.3.0
lz4 1.9.4-GCCcore-12.3.0
LZO 2.10-GCCcore-12.3.0
M4 1.4.19-GCCcore-12.3.0
M4 1.4.19
make 4.4.1-GCCcore-12.3.0
Mako 1.2.4-GCCcore-12.3.0
MariaDB 11.6.0-GCC-12.3.0
MATIO 1.5.26-GCCcore-12.3.0
matplotlib 3.7.2-gfbf-2023a
maturin 1.4.0-GCCcore-12.3.0-Rust-1.75.0
mctc-lib 0.3.1-GCC-12.3.0
Mesa 23.1.4-GCCcore-12.3.0
Meson 1.1.1-GCCcore-12.3.0
meson-python 0.13.2-GCCcore-12.3.0
METIS 5.1.0-GCCcore-12.3.0
mixedploidy-entropy 2.0-iimpi-2023a
ml_dtypes 0.3.2-gfbf-2023a
MNE-Python 1.7.1-foss-2023a
modbam2bed 0.5.3-gfbf-2023a
modbamtools 0.4.8-gfbf-2023a
modkit 0.4.0-GCCcore-12.3.0
MPC 1.3.1-GCCcore-12.3.0
MPFR 4.2.0-GCCcore-12.3.0
mpi4py 3.1.4-gompi-2023a
mstore 0.3.0-GCC-12.3.0
multicharge 0.3.0-gfbf-2023a
NASM 2.16.01-GCCcore-12.3.0
ncurses 6.4-GCCcore-12.3.0
ncurses 6.4
ncurses 6.3
netCDF 4.9.2-gompi-2023a
netcdf4-python 1.6.4-foss-2023a
nettle 3.9.1-GCCcore-12.3.0
networkx 3.1-gfbf-2023a
Newton-X 2.6-b01-GCCcore-12.3.0
NGenomeSyn 1.41-GCC-12.3.0-Perl-5.36.1
NiBabel 5.2.0-gfbf-2023a
Nilearn 0.10.3-gfbf-2023a
Ninja 1.11.1-GCCcore-12.3.0
nlohmann_json 3.11.2-GCCcore-12.3.0
NLopt 2.7.1-GCCcore-12.3.0
nodejs 18.17.1-GCCcore-12.3.0
NSPR 4.35-GCCcore-12.3.0
NSS 3.89.1-GCCcore-12.3.0
nsync 1.26.0-GCCcore-12.3.0
NTPoly 3.1.0-foss-2023a
numactl 2.0.16-GCCcore-12.3.0
numba 0.58.1-foss-2023a
ONNX 1.15.0-gfbf-2023a
openai-python 1.30.5-foss-2023a
OpenBLAS 0.3.23-GCC-12.3.0
OpenCV 4.8.1-foss-2023a-contrib
OpenEXR 3.1.7-GCCcore-12.3.0
OpenFOAM (OpenCFD Ltd) v2406-foss-2023a
OpenFOAM (The OpenFOAM Foundation) 12-foss-2023a
OpenJPEG 2.5.0-GCCcore-12.3.0
OpenMEEG 2.5.7-foss-2023a
OpenMPI 4.1.5-GCC-12.3.0
OpenPGM 5.2.122-GCCcore-12.3.0
OpenSSL 1.1
ORCA 6.0.0-gompi-2023a
OSU-Micro-Benchmarks 7.1-1-iimpi-2023a
OSU-Micro-Benchmarks 7.1-1-gompi-2023a
Pango 1.50.14-GCCcore-12.3.0
ParaView 5.11.2-foss-2023a
ParMETIS 4.0.3-gompi-2023a
patchelf 0.18.0-GCCcore-12.3.0
PCRE 8.45-GCCcore-12.3.0
PCRE2 10.42-GCCcore-12.3.0
PDM 2.12.4-GCCcore-12.3.0
Perl 5.36.1-GCCcore-12.3.0
Perl-bundle-CPAN 5.36.1-GCCcore-12.3.0
PhyKIT 1.19.9-foss-2023a
Pillow 10.0.0-GCCcore-12.3.0
Pillow-SIMD 9.5.0-GCCcore-12.3.0
pixman 0.42.2-GCCcore-12.3.0
pkgconf 1.9.5-GCCcore-12.3.0
pkgconf 1.8.0
pkgconfig 1.5.5-GCCcore-12.3.0-python
Planet 2.10.0-gfbf-2023a
plotly.py 5.16.0-GCCcore-12.3.0
PLY 3.11-GCCcore-12.3.0
PMIx 4.2.4-GCCcore-12.3.0
poetry 1.7.1-GCCcore-12.3.0
poetry 1.5.1-GCCcore-12.3.0
PostgreSQL 16.1-GCCcore-12.3.0
PROJ 9.2.0-GCCcore-12.3.0
protobuf 24.0-GCCcore-12.3.0
protobuf-python 4.24.0-GCCcore-12.3.0
psutil 5.9.8-GCCcore-12.3.0
psycopg2 2.9.9-GCCcore-12.3.0
pyBigWig 0.3.22-gfbf-2023a
pybind11 2.11.1-GCCcore-12.3.0
PyCairo 1.25.0-GCCcore-12.3.0
PyCharm 2024.2.2
py-cpuinfo 9.0.0-GCCcore-12.3.0
pydantic 2.5.3-GCCcore-12.3.0
pydicom 2.4.4-GCCcore-12.3.0
PyGObject 3.46.0-GCCcore-12.3.0
Pympler 1.1-GCCcore-12.3.0
pyproj 3.6.0-GCCcore-12.3.0
PyQt5 5.15.10-GCCcore-12.3.0
PyQt-builder 1.15.4-GCCcore-12.3.0
Pysam 0.22.0-GCC-12.3.0
PyTensor 2.17.1-gfbf-2023a
pytest 7.4.2-GCCcore-12.3.0
pytest-flakefinder 1.1.0-GCCcore-12.3.0
pytest-rerunfailures 12.0-GCCcore-12.3.0
pytest-shard 0.1.2-GCCcore-12.3.0
pytest-xdist 3.3.1-GCCcore-12.3.0
Python 3.11.3-GCCcore-12.3.0
Python-bundle-PyPI 2023.06-GCCcore-12.3.0
python-cdo 1.6.0-foss-2023a
python-xxhash 3.4.1-GCCcore-12.3.0
PyTorch 2.1.2-foss-2023a
PyTorch-Lightning 2.2.1-foss-2023a
PyYAML 6.0-GCCcore-12.3.0
PyZMQ 25.1.1-GCCcore-12.3.0
Qhull 2020.2-GCCcore-12.3.0
Qt5 5.15.10-GCCcore-12.3.0
QuantumESPRESSO 7.3-foss-2023a
R 4.4.1-gfbf-2023a
RapidJSON 1.1.0-20230928-GCCcore-12.3.0
rasterio 1.3.9-foss-2023a
rasterstats 0.19.0-foss-2023a
R-bundle-Bioconductor 3.19-foss-2023a-R-4.4.1
R-bundle-CRAN 2024.06-foss-2023a
RE2 2023-08-01-GCCcore-12.3.0
re2c 3.1-GCCcore-12.3.0
rnamotif 20240904-GCCcore-12.3.0
Rtree 1.2.0-GCCcore-12.3.0
Ruby 3.3.0-GCCcore-12.3.0
Rust 1.79.0-GCCcore-12.3.0
Rust 1.75.0-GCCcore-12.3.0
Rust 1.70.0-GCCcore-12.3.0
ScaLAPACK 2.2.0-gompi-2023a-fb
scikit_allel 1.3.11-foss-2023a
scikit-build 0.17.6-GCCcore-12.3.0
scikit-build-core 0.5.0-GCCcore-12.3.0
scikit-image 0.22.0-foss-2023a
scikit-learn 1.4.2-gfbf-2023a
scikit-learn 1.3.1-gfbf-2023a
SciPy-bundle 2023.07-gfbf-2023a
SCOTCH 7.0.3-gompi-2023a
SDL2 2.28.2-GCCcore-12.3.0
Seaborn 0.13.2-gfbf-2023a
sentinelsat 1.2.1-GCCcore-12.3.0
setuptools-rust 1.6.0-GCCcore-12.3.0
Shapely 2.0.1-gfbf-2023a
SIP 6.8.1-GCCcore-12.3.0
snappy 1.1.10-GCCcore-12.3.0
SNPTEST 2.5.6
spglib-python 2.1.0-gfbf-2023a
SQLAlchemy 2.0.25-GCCcore-12.3.0
SQLite 3.42.0-GCCcore-12.3.0
statsmodels 0.14.1-gfbf-2023a
SVG 2.87-GCC-12.3.0
SWIG 4.1.1-GCCcore-12.3.0
sympy 1.12-gfbf-2023a
Szip 2.1.1-GCCcore-12.3.0
tblite 0.3.0-foss-2023a
Tcl 8.6.13-GCCcore-12.3.0
tensorboard 2.15.1-gfbf-2023a
tensorboardX 2.6.2.2-foss-2023a
TensorFlow 2.15.1-foss-2023a
tiktoken 0.7.0-GCCcore-12.3.0
Tk 8.6.13-GCCcore-12.3.0
Tkinter 3.11.3-GCCcore-12.3.0
TorchGeo 0.6.0-foss-2023a
torchvision 0.16.0-foss-2023a
tornado 6.3.2-GCCcore-12.3.0
tqdm 4.66.1-GCCcore-12.3.0
typing-extensions 4.9.0-GCCcore-12.3.0
UCC 1.2.0-GCCcore-12.3.0
UCX 1.14.1-GCCcore-12.3.0
UDUNITS 2.2.28-GCCcore-12.3.0
Ultralytics 8.2.90-foss-2023a
UnZip 6.0-GCCcore-12.3.0
utf8proc 2.8.0-GCCcore-12.3.0
util-linux 2.39-GCCcore-12.3.0
VEP 113-GCC-12.3.0
virtualenv 20.23.1-GCCcore-12.3.0
VTK 9.3.0-foss-2023a
Wayland 1.22.0-GCCcore-12.3.0
X11 20230603-GCCcore-12.3.0
x264 20230226-GCCcore-12.3.0
x265 3.5-GCCcore-12.3.0
xarray 2023.9.0-gfbf-2023a
Xerces-C++ 3.2.4-GCCcore-12.3.0
XML-LibXML 2.0209-GCCcore-12.3.0
xorg-macros 1.20.0-GCCcore-12.3.0
xpclr 1.1.2-foss-2023a
Xvfb 21.1.8-GCCcore-12.3.0
xxHash 0.8.2-GCCcore-12.3.0
XZ 5.4.2-GCCcore-12.3.0
Yasm 1.3.0-GCCcore-12.3.0
Z3 4.12.2-GCCcore-12.3.0
zarr 2.17.1-foss-2023a
ZeroMQ 4.3.4-GCCcore-12.3.0
Zip 3.0-GCCcore-12.3.0
zlib 1.2.13-GCCcore-12.3.0
zlib 1.2.13
Zoltan 3.901-foss-2023a
zstd 1.5.5-GCCcore-12.3.0