SAMtools 1.9-GCC-8.2.0-2.31.1

There is a newer install of SAMtools

SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format.

Accessing SAMtools 1.9-GCC-8.2.0-2.31.1

To load the module for SAMtools 1.9-GCC-8.2.0-2.31.1 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load SAMtools/1.9-GCC-8.2.0-2.31.1

BEAR Apps Version

2019a

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the SAMtools website.

Dependencies

This version of SAMtools has a direct dependency on: bzip2/1.0.6-GCCcore-8.2.0 cURL/7.63.0-GCCcore-8.2.0 GCC/8.2.0-2.31.1 ncurses/6.1-GCCcore-8.2.0 XZ/5.2.4-GCCcore-8.2.0 zlib/1.2.11-GCCcore-8.2.0

Required By

This version of SAMtools is a direct dependent of: BatVI/1.02-foss-2019a DeepMod/0.1.1-foss-2019a-Python-3.7.2 rMATS/4.0.2-foss-2019a-Python-2.7.15 RNA_MUTECT/1.0-foss-2019a

Other Versions

These versions of SAMtools are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 1st August 2019