pybedtools 0.8.0-foss-2019a
There is a newer install of pybedtools
Python wrapper -- and more -- for Aaron Quinlan's BEDTools (bioinformatics tools)Accessing pybedtools 0.8.0-foss-2019a
To load the module for pybedtools 0.8.0-foss-2019a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):
📋
module load pybedtools/0.8.0-foss-2019a
BEAR Apps Version
Architectures
EL8-cascadelake — EL8-icelake — EL8-sapphirerapids
The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
More Information
For more information visit the pybedtools website.
Dependencies
This version of pybedtools has a direct dependency on: BEDTools/2.28.0-GCC-8.2.0-2.31.1 foss/2019a Pysam/0.15.2-foss-2019a Python/2.7.15-GCCcore-8.2.0 Python/3.7.2-GCCcore-8.2.0
This version of pybedtools is compatible with multiple vesions of Python. At any time, only one of the versions of Python can be active and the desired version of Python should be loaded before loading this version of pybedtools.
Required By
This version of pybedtools is a direct dependent of: ALFA/1.1.1-foss-2019a-Python-3.7.2 MMSplice/1.0.3-foss-2019a-Python-3.7.2
Other Versions
These versions of pybedtools are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.
| Version | BEAR Apps Version |
|---|---|
| 0.9.0-GCC-12.2.0 | 2022b |
| 0.9.0-GCC-11.3.0 | 2022a |
| 0.8.2-GCC-11.2.0 | 2021b |
| 0.8.1-GCC-10.2.0 | 2020b |
| 0.8.1-foss-2019b | 2019b |
Last modified on 11th October 2019