Cellpose 0.6.5-foss-2020b

There is a newer install of Cellpose

a generalist algorithm for cellular segmentation

Accessing Cellpose 0.6.5-foss-2020b

To load the module for Cellpose 0.6.5-foss-2020b please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load Cellpose/0.6.5-foss-2020b

BEAR Apps Version

2020b

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Extensions

Cellpose 0.6.5
natsort 7.1.1
pyqtgraph 0.12.2
tifffile 2021.8.8

More Information

For more information visit the Cellpose website.

Dependencies

This version of Cellpose has a direct dependency on: foss/2020b numba/0.53.1-foss-2020b OpenCV/4.5.1-foss-2020b-contrib PyQt5/5.15.1-GCCcore-10.2.0 Python/3.8.6-GCCcore-10.2.0 PyTorch/1.7.1-foss-2020b tqdm/4.56.2-GCCcore-10.2.0

Other Versions

These versions of Cellpose are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Version	BEAR Apps Version
2.2-foss-2022a-CUDA-11.7.0	2022a
2.2-foss-2022a	2022a
0.6.5-foss-2021a-CUDA-11.3.1	2021a
0.6.5-foss-2021a	2021a

Last modified on 11th August 2021