Cellpose 0.6.5-foss-2021a

There is a newer install of Cellpose

a generalist algorithm for cellular segmentation

Accessing Cellpose 0.6.5-foss-2021a

To load the module for Cellpose 0.6.5-foss-2021a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load Cellpose/0.6.5-foss-2021a

There is a GPU enabled version of this module: Cellpose 0.6.5-foss-2021a-CUDA-11.3.1

BEAR Apps Version

2021a

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Extensions

Cellpose 0.6.5
natsort 7.1.1
pyqtgraph 0.12.2
tifffile 2021.8.8

More Information

For more information visit the Cellpose website.

Dependencies

This version of Cellpose has a direct dependency on: foss/2021a numba/0.53.1-foss-2021a OpenCV/4.5.3-foss-2021a-contrib PyQt5/5.15.4-GCCcore-10.3.0 Python/3.9.5-GCCcore-10.3.0 PyTorch/1.9.1-foss-2021a-imkl tqdm/4.61.2-GCCcore-10.3.0

Other Versions

These versions of Cellpose are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Version	BEAR Apps Version
2.2-foss-2022a-CUDA-11.7.0	2022a
2.2-foss-2022a	2022a
0.6.5-foss-2021a-CUDA-11.3.1	2021a
0.6.5-foss-2020b	2020b

Last modified on 11th October 2021