scVelo 0.2.4-foss-2021a

scVelo is a scalable toolkit for estimating and analyzing RNA velocities in single cells using dynamical modeling.

Accessing scVelo 0.2.4-foss-2021a

To load the module for scVelo 0.2.4-foss-2021a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load scVelo/0.2.4-foss-2021a

BEAR Apps Version

2021a

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Extensions

• scVelo 0.2.4

More Information

For more information visit the scVelo website.

Dependencies

This version of scVelo has a direct dependency on: foss/2021a freetype/2.10.4-GCCcore-10.3.0 h5py/3.2.1-foss-2021a libpng/1.6.37-GCCcore-10.3.0 loompy/3.0.7-foss-2021a matplotlib/3.4.2-foss-2021a networkx/2.5.1-foss-2021a numba/0.53.1-foss-2021a PyTables/3.6.1-foss-2021a Python/3.9.5-GCCcore-10.3.0 scanpy/1.8.1-foss-2021a scikit-learn/0.24.2-foss-2021a SciPy-bundle/2021.05-foss-2021a Seaborn/0.11.2-foss-2021a statsmodels/0.12.2-foss-2021a Tkinter/3.9.5-GCCcore-10.3.0 tqdm/4.61.2-GCCcore-10.3.0 typing-extensions/3.10.0.0-GCCcore-10.3.0

Required By

This version of scVelo is a direct dependent of: CellRank/1.5.1-foss-2021a

Other Versions

These versions of scVelo are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 20th May 2022