CMSeq 1.0.4-foss-2021b

CMSeq is a set of commands to provide an interface to .bam files for coverage and sequence consensus.

Accessing CMSeq 1.0.4-foss-2021b

To load the module for CMSeq 1.0.4-foss-2021b please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2021b
module load CMSeq/1.0.4-foss-2021b

BEAR Apps Version

2021b

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the CMSeq website.

Dependencies

This version of CMSeq has a direct dependency on: bcbio-gff/0.6.9-foss-2021b biom-format/2.1.12-foss-2021b Biopython/1.79-foss-2021b foss/2021b Pysam/0.18.0-GCC-11.2.0 Python/3.9.6-GCCcore-11.2.0 SAMtools/1.15.1-GCC-11.2.0 SciPy-bundle/2021.10-foss-2021b

Required By

This version of CMSeq is a direct dependent of: MetaPhlAn/3.0.14-foss-2021b

Other Versions

These versions of CMSeq are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 14th July 2022